Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00313 ATGGCGAGGGAGCTGGAAAAGAAAGCCAAAGAAGCATTCATCGACGACGACTTTGCTCTCGCCGTTGATCTCTACACTCAAGCCATCCACTTGGATCCTAACAACGCTAACCTCTTCGCCGATAGAGCCCAAGCCCATATTAAGCTCAACGCTTTCACCGAAGCGGTTTCTGATGCTAACAAAGCTATCCAACTAAACCCTTCATTATCAAAGGCCTATCTTCGTAAAGGGACTGCTTGTATAAAGCTCGAAGAATATCATACTGCCAAGGTAGCACTGCAAAACGGCGCCTCTTTTGCTCAAGATGATTCAAGATTCACCAATTTGATTCAGGAATGTGATCGCTATATTGCAGAGGAATCAAATGGTCTCACTAGCACCTTATCACCAAATGGGCCCAAAACAACTGCACCATCTGGTGATAATCCCCATTCAAGTGATGGAAGTGATGGAACGACTAAAGAAGCTGAAAGAGATTTGGTATCACGAATCAATGAAGTTGCATTAATCAGACCAAAATATAGGTTACCACTGTGTTTTTTTCTTCTGCCCATGCTGCTCTTTCTTAACTCACTAAATCTTATAGGATAG 591 0.4298 MARELEKKAKEAFIDDDFALAVDLYTQAIHLDPNNANLFADRAQAHIKLNAFTEAVSDANKAIQLNPSLSKAYLRKGTACIKLEEYHTAKVALQNGASFAQDDSRFTNLIQECDRYIAEESNGLTSTLSPNGPKTTAPSGDNPHSSDGSDGTTKEAERDLVSRINEVALIRPKYRLPLCFFLLPMLLFLNSLNLIG. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00313 196 MobiDBLite consensus disorder prediction 123 157 - -
Seca10g00313 196 SMART tpr_5 2 35 IPR019734 GO:0005515
Seca10g00313 196 SMART tpr_5 36 69 IPR019734 GO:0005515
Seca10g00313 196 SMART tpr_5 70 103 IPR019734 GO:0005515
Seca10g00313 196 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Seca10g00313 196 MobiDBLite consensus disorder prediction 123 147 - -
Seca10g00313 196 FunFam Protein SGT1 homolog 1 127 - -
Seca10g00313 196 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Seca10g00313 196 Gene3D Tetratricopeptide repeat domain 1 122 IPR011990 GO:0005515
Seca10g00313 196 PANTHER PROTEIN SGT1 HOMOLOG 1 139 IPR044563 GO:0051087
Seca10g00313 196 Pfam Tetratricopeptide repeat 14 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00313 Seca-Chr10 2734706 2739892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00313 1 112 U-box Gene Family AT3G07370 29.464 9.70e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00313 K12795 - gmx:100784022 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00313 10 2734706 2739892 Seca10g00313 10 2734706 2739892 ECH