Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00300 ATGGAACAGAAAGGCATTTTGATGTCAGCGTTGGGCGTTGGGGTGGGAGTGGGAGTGGGAATTGGCTGGGCTTCTAGACCAAGCGTTAGCAAATGGGGAGCTAATGCTTGTTCATCAAGCGCCATCACTCCGGAGAAGATGGAGCGAGAAATGCTACGATTAATTGTTGATGGCAGAGAAAGCAATGTCACTTTCGATCAATTCCCTTATTATCTCAGTGAGCAAACACGGGTGTTGCTAACAAGTGCTGCCTATGTCCACTTGAAGCATGCAGAGGTTTCTAGATATACACGGAATCTTGCTCCAGGAAGCCGGACTATTCTGCTGTCAGGGCCAGCAGAACTTTATCAACAGGTGCTTGCCAAGGCTTTAGCTCACTACTTTGAGGCGAAGTTGCTTCTGTTAGATTTTACTGACTTTTCATTGAAGGTGTGTGTGAAAACTGAGAAGTTTGGTGTCATTTTAAACTTTCTCCTGTCTACTTCAGAGTCAACTTTGGAACGATTATCTGACCTATTTGGGTCATTTTCAATCTTCCCACAGAGGGAAGAGCATAAAGGCAAAATTCCCAGGCAAAGCAGTGGAGTGGACCTTCGATCAATGGAGGCTGACGGATCTTGTAACGCTCCTAAGCTTCGTAGGAATGCGTCTGCCTCTGCAAATATCAGTAGCCTTGGTTTGCAAAGCAACCCTACAAATTCAGCTCCTCTGAAGCACATAACCAGCTGGCCTTTTGATGAAAGGCTTGTTATACAAACTCTTTACAAGGTTCTAGTTTCAGTGTCAAAAACCTATCCCATTGTGCTATATCTGCGGGATGTTGATAAGCTGTTATATAGATCACAAAGGACACATATATTATTCAAGAAAATGTTGACGAAATTATCTGGACCAATTTTGATTCTTGGTTCACGAGTTCTGGATTCTGGTAATGACTGCAAAGAATTGAATGAGAGCCTTAATTCGCTCTTCCCCTACAATATTGAGATCAGGCCACCAGAAGATGAATCTCAACTTGTTAGCTGGAAGTCTCAATTTGAAGAGGATATGAAGAGGATACAGATCCAGGATAACAGGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACCTGGATTGCATCTGTGTAGCAGACACAATGGTTCTCAGTTACTATATAGAAGAGATTGTCATGTCAGCAATTTCTTATCATTTGATGAATAACAAAGATCCTGAGTACAGAAATGGGAAACTGGTTATTCCATGCAATAGTTTGTCCCATGCATTGGGTATATTCCAGGATGGGAAATTCAGAGGAAGAGATACATTAAAATTAGAAGCTCAAGCAGTAACTTCTGAGGTTAGCATGCTTGTCATGTCTGTGCAAGAGGAAGGAGCTGTAACGAAACCAGAAGGAAAGCCTGACAATCCTGCTCCTGATACAAAGGCTGAAGCAGAAATACCAGCTTCCGTGGGAAAAGCTGACGGTGAAAATTCAGTTCCTGCATCCAAAGCTCAGGAAGTTCCTCCCGATAATGAGTTTGAGAAGCGAATAAGACCTGAGGTAATACCAGCAAACGAGATTGGTGTAACATTCTCCGATATTGGTGCCTTAGATGATACCAAAGAATCACTTCAAGAACTAGTAATGCTTCCTCTTCGAAGGCCAGACCTTTTCAAAGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTATTTGGGCCTCCTGGCACCGGAAAGACAATGCTGGCAAAGGCCATTGCAAATGAGGCTGGAGCAAGTTTTATTAATGTGTCCATGTCTACCATAACCTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGTGCTTTATTCACACTGGCAGCAAAGGTCTCCCCAACTATAATATTTGTTGATGAGGTTGATAGTATGCTTGGGCAGAGGACCAGAGTTGGGGAGCATGAAGCCATGCGGAAAATAAAGAATGAATTTATGACCCATTGGGACGGGCTTATGACAAATCCTGGGGAGCGCATCCTTGTTCTTGCAGCAACCAATAGGCCGTTTGACCTGGATGAAGCAATTATTAGACGATTTGAAAGGAGAATTATGGTAGGGCTACCATCTGTGGAGAACAGGGAAAAGATACTGAGGACTCTTTTGGCTAAAGAGGTGGTGGACCAGGAACTTGATTTTAAGGAACTCGCAACTGTGACAGAAGGATATAGCGGAAGTGATCTAAAGAACTTGTGCATAACTGCTGCTTATAGGCCTGTTCGAGAGTTAATTCAGCAAGAGAGACTAAAGAATTTGGAGAAAAAGCAGAAAGATGTTGAAGGACAGAATAATTTTGTCCAAGACGTACAAGGAGAACAATCTACGGCAGGAAATACCCAAGACGCCCAGGATGCAGAAGAGGAAGTTGAACAGGAAAGAGTTATTACCCTTAGGCCTTTGAATATGCAGGACTTCAAAGAGGCAAAGAATCAGGTTGCTGCAAGCTTCGCAGCTGAGGGTGCTGGAATGAATGAATTAAAGCAATGGAATGATTTGTATGGGGAAGGCGGTTCAAGGAAGCGAGAGCAATTATCTTACTTCCTATAA 2580 0.4306 MEQKGILMSALGVGVGVGVGIGWASRPSVSKWGANACSSSAITPEKMEREMLRLIVDGRESNVTFDQFPYYLSEQTRVLLTSAAYVHLKHAEVSRYTRNLAPGSRTILLSGPAELYQQVLAKALAHYFEAKLLLLDFTDFSLKVCVKTEKFGVILNFLLSTSESTLERLSDLFGSFSIFPQREEHKGKIPRQSSGVDLRSMEADGSCNAPKLRRNASASANISSLGLQSNPTNSAPLKHITSWPFDERLVIQTLYKVLVSVSKTYPIVLYLRDVDKLLYRSQRTHILFKKMLTKLSGPILILGSRVLDSGNDCKELNESLNSLFPYNIEIRPPEDESQLVSWKSQFEEDMKRIQIQDNRNHIMEVLAANDLDCDDLDCICVADTMVLSYYIEEIVMSAISYHLMNNKDPEYRNGKLVIPCNSLSHALGIFQDGKFRGRDTLKLEAQAVTSEVSMLVMSVQEEGAVTKPEGKPDNPAPDTKAEAEIPASVGKADGENSVPASKAQEVPPDNEFEKRIRPEVIPANEIGVTFSDIGALDDTKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMTNPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLAKEVVDQELDFKELATVTEGYSGSDLKNLCITAAYRPVRELIQQERLKNLEKKQKDVEGQNNFVQDVQGEQSTAGNTQDAQDAEEEVEQERVITLRPLNMQDFKEAKNQVAASFAAEGAGMNELKQWNDLYGEGGSRKREQLSYFL. 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00300 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 528 767 IPR027417 -
Seca10g00300 859 ProSitePatterns AAA-protein family signature. 671 690 IPR003960 GO:0005524|GO:0016887
Seca10g00300 859 SMART AAA_5 564 701 IPR003593 GO:0016887
Seca10g00300 859 Pfam ATPase family associated with various cellular activities (AAA) 568 698 IPR003959 GO:0005524|GO:0016887
Seca10g00300 859 MobiDBLite consensus disorder prediction 782 801 - -
Seca10g00300 859 Coils Coil 760 780 - -
Seca10g00300 859 Gene3D - 700 771 - -
Seca10g00300 859 MobiDBLite consensus disorder prediction 488 512 - -
Seca10g00300 859 Gene3D - 527 699 IPR027417 -
Seca10g00300 859 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 858 - -
Seca10g00300 859 Pfam AAA+ lid domain 722 764 IPR041569 -
Seca10g00300 859 MobiDBLite consensus disorder prediction 462 481 - -
Seca10g00300 859 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 527 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00300 Seca-Chr10 2607317 2614498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00300 528 760 Calmodulin-binding Proteins AT3G56690 38.136 1.42e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00300 - - gmx:100783137 1315.06