Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00298 ATGGGTAACTGCAGCAGCGAACCCTCTGCCAAAACCCAACCGAATTCGGACGCCACACCCTCCAATGGCATCTCCGATCGGAAACCCAACCCACCACCCTCCTCCGTGGGCCGCGTCCTGGGCCGACCCATGGAGGACGTTCGCTCCACCTACATCTTCGGCCGCGAACTAGGCCGCGGTCAGTTCGGAGTGACATACCTTGTGACTCACAAAGTCACCAAGGAGCAGTTTGCTTGCAAATCCATCGCCACGCGCAAGCTCGTTCACCGCGATGACTTGGAAGACATTCGCCGCGAGGTTCAGATCATGCACCACCTCACCGGTCATCTCAACATCGTTGAGCTCAAAGCTGCTTACGAGGATCGCCACTCCGTCAACCTCATCATGGAACTCTGCGCCGGCGGCGAGCTCTTCGACAGGATCATATCCAAGGGCCATTACTCTGAGCGTGCCGCAGCCAACTTGTGTCGCCAGATCGTCACTGTGGTCCACAATTGTCACACCATGGGAGTGATGCATAGGGATTTGAAGCCCGAGAATTTCTTGTTCCTTAGCAAGGACGAGAATTCGCCTCTTAAGGCCACGGATTTCGGTCTCTCCGTGTTTTTCAAGCCTGTGATGCGATGCTTGTTAACATTTTTGAGATCAGGAGATGTATTTAAAGATCTTGTTGGGAGTGCCTATTATGTTGCTCCTGAAGTGCTGCGTAGAAGTTATGGACCCGAAGCTGATATTTGGAGTGCCGGTGTTATACTATACATTCTGCTCTCTGGTGTCCCACCCTTCTGGGCAGAGAAAGAGCAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTCGCATCAGATCCTTGGCCTTCCATATCTAGTAGTGCCAAAGACCTGGTCAAGAAGATGCTACGAGCTGACCCTAAAGAACGGCTTTCGGCAGTTGAAGTCCTTGATCATCCCTGGATGAAAGAAGATGGAGCATCCGATAAGCCTCTTGATATTGCTGTTTTAACCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATTGCTGAGAATCTTTCTGAAGAAGAGATCATTGGCTTGAAGGAAATGTTCAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCCAAACTGGGTACTAAAATTTCCGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTAGACGGAAATGGAGCCATTGATTATATTGAATTTATAACAGCTACCATGCACATGAATAGAATGGAAAGAGAGGACCACCTATATAAAGCTTTTGAATATTTTGACAAGGATAAAAGCGGGTACATCACAATGGAAGAGTTGGAATCTGCCCTTAAAAAGTATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCGGAAGTTGATACAGACAATGATGGAAGAATTAATTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGACTTGGTAACCAACAGACGTCGCAAATAA 1539 0.4711 MGNCSSEPSAKTQPNSDATPSNGISDRKPNPPPSSVGRVLGRPMEDVRSTYIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLVHRDDLEDIRREVQIMHHLTGHLNIVELKAAYEDRHSVNLIMELCAGGELFDRIISKGHYSERAAANLCRQIVTVVHNCHTMGVMHRDLKPENFLFLSKDENSPLKATDFGLSVFFKPVMRCLLTFLRSGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAEKEQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRADPKERLSAVEVLDHPWMKEDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKISESEVRQLMEAADVDGNGAIDYIEFITATMHMNRMEREDHLYKAFEYFDKDKSGYITMEELESALKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDLVTNRRRK. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00298 512 FunFam Calcium-dependent protein kinase 1 53 136 - -
Seca10g00298 512 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Seca10g00298 512 MobiDBLite consensus disorder prediction 1 41 - -
Seca10g00298 512 ProSiteProfiles Protein kinase domain profile. 51 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00298 512 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Seca10g00298 512 SMART serkin_6 51 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00298 512 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524
Seca10g00298 512 Gene3D Phosphorylase Kinase; domain 1 53 136 - -
Seca10g00298 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Seca10g00298 512 MobiDBLite consensus disorder prediction 1 29 - -
Seca10g00298 512 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Seca10g00298 512 SUPERFAMILY Protein kinase-like (PK-like) 48 331 IPR011009 -
Seca10g00298 512 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Seca10g00298 512 ProSitePatterns EF-hand calcium-binding domain. 375 387 IPR018247 -
Seca10g00298 512 Gene3D Transferase(Phosphotransferase) domain 1 137 327 - -
Seca10g00298 512 SUPERFAMILY EF-hand 358 499 IPR011992 -
Seca10g00298 512 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Seca10g00298 512 PANTHER SERINE/THREONINE-PROTEIN KINASE 48 494 - -
Seca10g00298 512 Gene3D - 328 502 - -
Seca10g00298 512 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Seca10g00298 512 Pfam EF-hand domain pair 367 427 IPR002048 GO:0005509
Seca10g00298 512 Pfam EF-hand domain pair 437 499 IPR002048 GO:0005509
Seca10g00298 512 Pfam Protein kinase domain 53 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00298 512 FunFam Calcium-dependent protein kinase 1 327 502 - -
Seca10g00298 512 ProSiteProfiles EF-hand calcium-binding domain profile. 470 504 IPR002048 GO:0005509
Seca10g00298 512 SMART efh_1 402 430 IPR002048 GO:0005509
Seca10g00298 512 SMART efh_1 473 501 IPR002048 GO:0005509
Seca10g00298 512 SMART efh_1 366 394 IPR002048 GO:0005509
Seca10g00298 512 SMART efh_1 438 466 IPR002048 GO:0005509
Seca10g00298 512 CDD STKc_CAMK 51 319 - -
Seca10g00298 512 FunFam calcium-dependent protein kinase 1 137 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00298 Seca-Chr10 2593499 2598092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00298 37 511 EF-hand Containing Proteins AT4G23650 80.462 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca10g00298 Pkinase 1.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00298 K13412 - gmx:100817321 918.687