Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00287 ATGGAATATTTTGCACGCATTTTGTGTTCCATTTACCTGGTGGTGAGTTTCATGGCGTGGCAAGGAAATGCAGAAGCTGTTGAAGACAAGCAAGCTTTGCTAGAGTTTGTGAAAAAGTTGCCTCCTTCTCGGCCTTTGAATTGGAATGAGAGGTCTTCAGTGTGTACCAGTTGGATTGGAGTGACTTGTAACGAAGATAAGTCCCGAGTTATAGCCATTCGATTGCCAGGGTTTGGATTTCATGGCACCATTCCTTCTGATACAATAAGCCGCATAACGGGGCTTCAAACATTGAGCCTCAGATCCAACTTCATAAGTGGCCATTTTCCTTCTGATTTCTCCAATCTCAAGAACCTTTCTTTTCTCTATCTTCAATTCAACAATTTGACAGGTCCTTTGCCGGACTTTTCTGCTTGGAAGAATCTCTCTGTTGTCAATTTGTCCAATAACCATTTCAGTGGCAGCATTCCTTTTTCCCTTTCCAATTTGACTGAGCTTGTTGGTTTGAATCTTGCAAACAACTCGCTTTCTGGTGAAATCCCTGATCTCAAATTGCCCAGGTTGCAGCAACTGAATTTGTCTAACAACAATTTATATGGGGGTGTGCCTGTGTCCCTTCAAATGTTTCCTAATGCAGCATTCGTTGGAAACAACATTTCTCTTGGCAGCTCTCCTGTAACACCACCCTCTTCCAAACCTGAGAAACATGGAAGGCTTGGCAGAACTGTAGTGTTGGGGATTATTGTTGCTGGTGCTGTTCTTGGCCTTGCAGCATTCCTTGTTTTTGTATTTGTATACTGCTTGAGAAGGAAGGGTGGAGATGCCTTTGCTGGCAAGTTGCAGAAGGGAGATATGTCTCCTGAAAAAGTGGTCTCAAGGAGCCTGGATGCAAACAATAAACTTGTTTTCTTTGAGGGTTGTAATTATGCATTTGACTTGGAAGATTTATTAAGGGCTTCTGCTGAGGTGCTGGGTAAGGGAACATTTGGTGCCTCATACAAGGCCGTACTAGAGGATGCAACCACAGTTGTTGTGAAGAGGTTAAAGGAGGTAGCTGTTGGAAAGAAGGATTTTGAGCAACACATGGATATTGTTGGAAGTCTTAAACATGACAATGTGGTTGAGCTAAAGGCATATTACTATTCCAAAGATGAGAAACTGATGGTGTATGATTACTACAGTCAGGGGAGCATCTCTGCTTTGTTGCATGGTAAAAGAGGAGAGGATAGGGTGGCTTTAGGTTGGGATACTCGAATCAAAATAGCTTTAGGTGCTGCACGAGGCCTTGCTCGTATCCATTCTGAGAATGGCGGGAAACTTGTACATGGCAATATCAGATCCTCAAATATCTTTCTCAATGCTAAACAGTATGGTTGTGTATCTGATCTTGGCCTGGCAACCATAATGAGCTCAGTTGCTGTACCGGTGTCGCGAGCTGCTGGTTACCGAGCACCTGAAATTACAGACACCAGGAAAGCAACACAGTCTTCAGATGTATACAGCTTTGGTGTGGTGTTACTAGAGCTTCTGACTGGGAAATCACCTATCCATACAACTGGTGGGGATGAGATTGTCCACCTTGTGAGATGGGTTCATTCAGTTGTGAGAGAGGAGTGGACAGCTGAAGTATTTGACTTAGAGCTGATAAGATATCCTAACATAGAGGAAGAGATGGTGGAGATGTTACAGATAGCACTGTCATGCGTAGCAAGGGTGCCTGATCAGAGACCTAAGATGTTAGAAATAGTAAAGATGATAGAAAATGTAAGGCAGATGGATATAGAGAATCAGAATCAGGCATCATCTGAGAACCAAGCTGAAAGTGCAGCACAGGCACAACCCTCTTTAAACACCTCTCAACGTGACAGTGACAACTTAGCTTCTGCCCCTTCCTCTAGTCCTCCCCCTATCCAAAACGGAAGTGAATGA 1929 0.4365 MEYFARILCSIYLVVSFMAWQGNAEAVEDKQALLEFVKKLPPSRPLNWNERSSVCTSWIGVTCNEDKSRVIAIRLPGFGFHGTIPSDTISRITGLQTLSLRSNFISGHFPSDFSNLKNLSFLYLQFNNLTGPLPDFSAWKNLSVVNLSNNHFSGSIPFSLSNLTELVGLNLANNSLSGEIPDLKLPRLQQLNLSNNNLYGGVPVSLQMFPNAAFVGNNISLGSSPVTPPSSKPEKHGRLGRTVVLGIIVAGAVLGLAAFLVFVFVYCLRRKGGDAFAGKLQKGDMSPEKVVSRSLDANNKLVFFEGCNYAFDLEDLLRASAEVLGKGTFGASYKAVLEDATTVVVKRLKEVAVGKKDFEQHMDIVGSLKHDNVVELKAYYYSKDEKLMVYDYYSQGSISALLHGKRGEDRVALGWDTRIKIALGAARGLARIHSENGGKLVHGNIRSSNIFLNAKQYGCVSDLGLATIMSSVAVPVSRAAGYRAPEITDTRKATQSSDVYSFGVVLLELLTGKSPIHTTGGDEIVHLVRWVHSVVREEWTAEVFDLELIRYPNIEEEMVEMLQIALSCVARVPDQRPKMLEIVKMIENVRQMDIENQNQASSENQAESAAQAQPSLNTSQRDSDNLASAPSSSPPPIQNGSE. 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00287 642 Gene3D Transferase(Phosphotransferase) domain 1 394 615 - -
Seca10g00287 642 FunFam pollen receptor-like kinase 1 287 392 - -
Seca10g00287 642 Pfam Protein kinase domain 321 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00287 642 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Seca10g00287 642 ProSiteProfiles Protein kinase domain profile. 318 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00287 642 SUPERFAMILY Protein kinase-like (PK-like) 322 601 IPR011009 -
Seca10g00287 642 MobiDBLite consensus disorder prediction 598 642 - -
Seca10g00287 642 Gene3D Ribonuclease Inhibitor 28 138 IPR032675 -
Seca10g00287 642 Gene3D Ribonuclease Inhibitor 139 227 IPR032675 -
Seca10g00287 642 FunFam Probable inactive receptor kinase RLK902 26 184 - -
Seca10g00287 642 PANTHER OS05G0588300 PROTEIN 7 602 - -
Seca10g00287 642 Gene3D Phosphorylase Kinase; domain 1 285 392 - -
Seca10g00287 642 SUPERFAMILY L domain-like 39 208 - -
Seca10g00287 642 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 393 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00287 Seca-Chr10 2486955 2489506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00287 18 615 Receptor kinase-like Gene Family AT4G23740 61.874 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca10g00287 Pkinase 2.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00287 - - gmx:100804799 912.909