Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00286 ATGACGAAGAAATACACTCACCACATCCTCAACCACACCAAACACGATAACCATCCATTTCCCAGAGTGGTGAGGATAACCGTCACAGACACCTACGCTACCGACTCCTCCAGCGACGAAAAAGAAGAAGAAAAAGCCTTCCCCTCTTCCACGCGTCAACGCCATAAAAAGTTCGTCAACGAGATTATCATTGAGAATAATGACGGCGTCGTTTCGAGGAAGAGGAGCAGGAACAAGTCCGGCACCGCCGGAAAAGCAGCCAGAGCTCCGGCGAGTCAGCCTGTTTCCTCCGGCAAGAAATTCCGGGGAGTGAGGCAGAGGCCGTGGGGAAAATGGGCGGCAGAGATAAGAGACCCGTCACGACGCGTACGGGTTTGGTTGGGTACCTTCGACACTGCAGAGGAAGCTGCCATGGTGTACGACAACGCAGCCATTAAGATGCGTGGACCTGACGCGCTCACTAATTTCATAACGCCGCCTGCCACGTGGCAGTGCTCTCCGGGGAATGAAAAGCCGGCACCGAACTGCGGTTACAATTCCGGGGAAGAATCTCAAAGCAAGAATTTGTTTTCTCCAACTTCCGTGCTTTCATTGTCCGAAGAAGCTGAATCTGTCGCTGGCAAAGACGACGAATACTCGTGTGTGTCGGAGAATTTGTGTGAAAAGATGATGCCACCAGCAACTGTTGTTAAGGGTGAATCTGAGTCACTGTTTCCAATTCCTAGCGATATACTATTTGACTTCCAAGGTTCCCCGTCAGCACAGGACGTTTTTGACAACACACTACCAGAGAGCATTTTCTACGGCGATGGTGTCTTTCTCACTTCTTCTGAAGATTTGGATTTCAGTTTCAATAGTTGGCATACTAATAGAAATCGTGACTTTTTCCAAGATATAGACGATTTATTTGTTTCAGATCCGCTTCTTGCCCTTTGA 936 0.4904 MTKKYTHHILNHTKHDNHPFPRVVRITVTDTYATDSSSDEKEEEKAFPSSTRQRHKKFVNEIIIENNDGVVSRKRSRNKSGTAGKAARAPASQPVSSGKKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAMVYDNAAIKMRGPDALTNFITPPATWQCSPGNEKPAPNCGYNSGEESQSKNLFSPTSVLSLSEEAESVAGKDDEYSCVSENLCEKMMPPATVVKGESESLFPIPSDILFDFQGSPSAQDVFDNTLPESIFYGDGVFLTSSEDLDFSFNSWHTNRNRDFFQDIDDLFVSDPLLAL. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00286 311 FunFam Ethylene-responsive transcription factor 2 99 158 - -
Seca10g00286 311 CDD AP2 99 156 IPR001471 GO:0003700|GO:0006355
Seca10g00286 311 MobiDBLite consensus disorder prediction 69 104 - -
Seca10g00286 311 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
Seca10g00286 311 SUPERFAMILY DNA-binding domain 100 156 IPR016177 GO:0003677
Seca10g00286 311 MobiDBLite consensus disorder prediction 35 53 - -
Seca10g00286 311 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Seca10g00286 311 Gene3D AP2/ERF domain 99 158 IPR036955 GO:0003700|GO:0006355
Seca10g00286 311 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Seca10g00286 311 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Seca10g00286 311 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Seca10g00286 311 MobiDBLite consensus disorder prediction 31 53 - -
Seca10g00286 311 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00286 Seca-Chr10 2467709 2468644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00286 20 311 AP2-EREBP Transcription Factor Family AT4G11140 42.809 1.85e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca10g00286 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00286 - - lja:Lj2g3v2087840.1 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00286 10 2467709 2468644 Seca10g00286 10 2467709 2468644 ECH
Seca10g00286 10 2467709 2468644 Seca12g06564 12 157777316 157778248 PCT