Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00273 ATGGATGAGCGTCTCCGAAATAAGGCAAAGAGGGCAAAGATCTCCCAAAAATCAAGTACAACCTCTGAAGAAGTGAGCAGTACTGAGTGGGAATTCATAGAGATGAGCGAGCAAGAGGAGGATCTCATTCGCAGGATGTATGGCTTAGTTGGAGATAGGTGGAATTTGATAGCAGGTCGCATTCCAGGTCGTAAAGCAGAAGAAATAGAGAGATACTGGATTATGAGACACGGCGATGCTTTTTCTGTTAGAAGAAATGAACGTAAAGTCTAA 273 0.4322 MDERLRNKAKRAKISQKSSTTSEEVSSTEWEFIEMSEQEEDLIRRMYGLVGDRWNLIAGRIPGRKAEEIERYWIMRHGDAFSVRRNERKV. 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00273 90 MobiDBLite consensus disorder prediction 1 26 - -
Seca10g00273 90 Pfam Myb-like DNA-binding domain 35 74 IPR001005 -
Seca10g00273 90 Gene3D - 35 76 - -
Seca10g00273 90 CDD SANT 34 73 IPR001005 -
Seca10g00273 90 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 34 75 - -
Seca10g00273 90 SMART sant 31 79 IPR001005 -
Seca10g00273 90 FunFam MYB-like transcription factor 34 76 - -
Seca10g00273 90 SUPERFAMILY Homeodomain-like 36 74 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00273 Seca-Chr10 2353634 2356423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00273 35 73 MYB Transcription Factor Family AT5G52600 61.538 1.32e-12 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca10g00273 Myb_DNA-binding 7.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00273 K09422 - gmx:100814431 124.02