Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00271 ATGGAGGGAATGCAAGCACACCTTGAACTCCGAGATGGTGCTGATATTGGGTCCTCTTTATCAAAGCTCATTCTATCAAGTGGGACAAACACCCTTGACTCAATTTTCTCTGATTACCCCTTGACAAATGGTGGTTCTAGTTCTACTACTACTACTACTACAACTAATTCTATGTTGGATTACTTGGAACCCTTTGGTTCTTCAGCTTTTGAGCCTTTGGGTTCCTCTGTCTACCTTCGCCAAAGAGACATCCTGCAAAAATTCTACCACGAAACCCGGGGAAATGGGTCTTTTGTTCCCACTTCCTTTGCAAATCCATCTCTAAACCCTGTATACACGAGTTCTCTAACCTCTTTCTTGAACCCTAGCAAGAAAAAGCTATACAGGGGAGTGAGACAGAGGCACTGGGGAAAATGGGTCGCTGAAATTAGACTCCCTCAGAATAGGATGAGGGTCTGGTTAGGCACTTACGACACTGCAGAAGCTGCTGCATATGCTTATGATCGTGCAGCTTATAAGCTCCGTGGAGAATATGCACGTTTAAATTTCCCGAATCTGAAGGACCCAAGTAAGTTAGGATTCGGAGATTCAACGAGGTTGAATGCGTTGAAAAGCTCAGTGGATGCCAAAATTCAAGCTATATGTCAAAAGGTGAAAAGGGAGAAAGCCAAAAAGAGTGCCGCAAAGAAGCTGAATTCAGGGAGTGACACAAACCGTGGGAAGAGTGAGAAATCACAACAGAAGATCAACTCGTCTTCTTGTTCTTCTTCATCATCGCTACCGTTATCACCGCCGTCGATTTTTTATGATAATTGGGCGAACGAGTTGTTTTCACCGACTGTTTCAGAGGATGGAATTTGGAAAGGAGAGAACTCTTTTGGCTCTGTTTCGACAGAATGTCCAAAAATGGTAACAGGGGAAACAGAGTTCGAAGGATGTTCCCTTGCAAGGATGCCATCTTTTGATCCTGAATTGATTTGGGAAGTTCTGGCTGTTTAG 999 0.4384 MEGMQAHLELRDGADIGSSLSKLILSSGTNTLDSIFSDYPLTNGGSSSTTTTTTTNSMLDYLEPFGSSAFEPLGSSVYLRQRDILQKFYHETRGNGSFVPTSFANPSLNPVYTSSLTSFLNPSKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSKLGFGDSTRLNALKSSVDAKIQAICQKVKREKAKKSAAKKLNSGSDTNRGKSEKSQQKINSSSCSSSSSLPLSPPSIFYDNWANELFSPTVSEDGIWKGENSFGSVSTECPKMVTGETEFEGCSLARMPSFDPELIWEVLAV. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00271 332 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 18 330 - -
Seca10g00271 332 MobiDBLite consensus disorder prediction 230 261 - -
Seca10g00271 332 ProSiteProfiles AP2/ERF domain profile. 127 184 IPR001471 GO:0003700|GO:0006355
Seca10g00271 332 Gene3D AP2/ERF domain 127 185 IPR036955 GO:0003700|GO:0006355
Seca10g00271 332 Pfam AP2 domain 128 177 IPR001471 GO:0003700|GO:0006355
Seca10g00271 332 FunFam Ethylene-responsive transcription factor 2 126 185 - -
Seca10g00271 332 SMART rav1_2 127 190 IPR001471 GO:0003700|GO:0006355
Seca10g00271 332 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Seca10g00271 332 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Seca10g00271 332 SUPERFAMILY DNA-binding domain 127 184 IPR016177 GO:0003677
Seca10g00271 332 CDD AP2 126 186 IPR001471 GO:0003700|GO:0006355
Seca10g00271 332 MobiDBLite consensus disorder prediction 225 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00271 Seca-Chr10 2324325 2325323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00271 14 331 AP2-EREBP Transcription Factor Family AT1G64380 46.629 7.52e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca10g00271 AP2 7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00271 - - gmx:100785364 411.379