Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00270 ATGAATTCCATGGAGACTACCGCCACGGAAAGTACCAAATGTAAGGAAATTGAACGACGCTACGATAATTACCGAAAGAAGAGAAAACGACCTTGTAAGGTGGCTGTGATTCCCACAATTGAATCAACCGGAGATGATAATTGCTCCGCCACCGCATCACACGGTTTCATCTCCGTCATAGGTCGGCGGAGGGTGATGGAGGACGCCGTTAAGGTCGTTCCAGGTCTTTTGCCGGTGGAACAGCGATCCTGCGGCTACGATTTCTTCGCGGTTTATGACGGACACGGTGGGACGAAGGTGGCGAATGCTTGCCGTGACAGGTTGCACTTGTTGTTGGCAGAGGAAGTGAAGAAGGAAGGGTGGAAGGAATTGGATTGGTGTAAGGTTATGTGTTCTTGTTTCATGAAGATGGACCAAGAAATTGGAGTCGGTGGTGAAACGGACGATGACTTGGGCGGGAACACTATGGGTTCTACGGCGGCGGTTGTGGTGGTTGGGAAGGAGGAGATTGTGGTGGCCAATTGTGGAGACTCAAGAGCGGTTTTGTGTCGCGGCGGTGTAGCTGTGCCACTTTCACGTGATCATAAGTCTGTTTTATTTTGGTTGAATCAGCCTGATCTTCCAGATGAAAAAGAAAGGATTGAAGCTGCTGGTGGAAGAGTCATTAATTGGAATGGGAATCGTGTTTTAGGAGTACTCGCTACGTCCAGATCCATAGGGGATCACTGCATGAAGCCTTTTGTGATCTCTCAACCAGAGATAAAGGTGCATGCACGAACAGAGGAAGATGAGTTTGTTGTGGTAGCGAGTGACGGTCTGTGGGATGTAGTATCAAACAAGTTTGCTTGTAAGGTGGCAAGAAGTTGCCTCCAAGGGCACATGAAGAGGAATTTAAAAGAGGACTCTATGAAAAGTTATGCAGCAGAGGCAGCGGCATTGTTAGCTGAGTTGGCTATGGCTCGGGGAAGCAAAGACAACATCAGTGTTATAGTCATCCAGCTCAAGGATTTTTGCCATTCAACCTCCTAG 1029 0.483 MNSMETTATESTKCKEIERRYDNYRKKRKRPCKVAVIPTIESTGDDNCSATASHGFISVIGRRRVMEDAVKVVPGLLPVEQRSCGYDFFAVYDGHGGTKVANACRDRLHLLLAEEVKKEGWKELDWCKVMCSCFMKMDQEIGVGGETDDDLGGNTMGSTAAVVVVGKEEIVVANCGDSRAVLCRGGVAVPLSRDHKSVLFWLNQPDLPDEKERIEAAGGRVINWNGNRVLGVLATSRSIGDHCMKPFVISQPEIKVHARTEEDEFVVVASDGLWDVVSNKFACKVARSCLQGHMKRNLKEDSMKSYAAEAAALLAELAMARGSKDNISVIVIQLKDFCHSTS. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00270 342 ProSiteProfiles PPM-type phosphatase domain profile. 53 334 IPR001932 -
Seca10g00270 342 SMART PP2C_4 43 332 IPR001932 -
Seca10g00270 342 SUPERFAMILY PP2C-like 51 336 IPR036457 -
Seca10g00270 342 Pfam Protein phosphatase 2C 55 327 IPR001932 -
Seca10g00270 342 PANTHER PROTEIN PHOSPHATASE 33 334 IPR015655 GO:0004722|GO:0006470
Seca10g00270 342 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Seca10g00270 342 CDD PP2Cc 53 334 IPR001932 -
Seca10g00270 342 Gene3D - 45 337 IPR036457 -
Seca10g00270 342 FunFam Protein phosphatase 2C 51 46 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00270 Seca-Chr10 2303984 2305753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00270 50 335 PP2C-type Phosphatase Gene Family AT2G29380 48.148 7.46e-83 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00270 K14497 - gmx:100813248 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00270 10 2303984 2305753 Seca10g00270 10 2303984 2305753 ECH