Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00234 ATGCAAGGAGGCGCAGCCGACGGAGAGGCGCTGGATTTCGAGCCGGAGGATGATGACTTGATGGACGAGGACGGCGCTCCTGACGCCGACGCTTCTCCCCCTCTTCCTAAGCTCAAATCTGCCATCACTGCCGGCACCTCTTCCGCCCCCAAAAAGACCAAGGGTCGCGGTTTCCGTCAGGACACCGACTCCAACCGCAACACTCGCCTCTCCGGCTCCGATTTCGACTCTCTTACTACCGAGGGTGGCCCTGGCCCTCAAAGATCCATTGAAGGATGGATTATTTTGGTCACCGGTGTGCACGAGGAAGCTCAAGAGGATGATTTGCAAAACGCCTTTGGTGAATACGGAGAGATTAAGAACCTCCATTTGAATCTCGATCGTCGCACTGGTTTTGTCAAAGGGTACGCACTGATTGAATATGAGCGTGCTGAGGAAGCTCGGAATGCAATAGAGAATTTGAATGGATCTGAGCTTCTTACACAAACCATTTATGTTGACTGGGCTTTCAGCAGTGGACCTATTAATGAGTCGATCAGAAGAAAGAATGCTAGACCATCTCGCGAACGGCGCTCCAGGAGTCCTCGGAGGAGATATTGA 600 0.525 MQGGAADGEALDFEPEDDDLMDEDGAPDADASPPLPKLKSAITAGTSSAPKKTKGRGFRQDTDSNRNTRLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINESIRRKNARPSRERRSRSPRRRY. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00234 199 FunFam RNA-binding protein 8A-like 28 190 - -
Seca10g00234 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 171 IPR000504 GO:0003723
Seca10g00234 199 Gene3D - 37 184 IPR012677 -
Seca10g00234 199 MobiDBLite consensus disorder prediction 179 199 - -
Seca10g00234 199 MobiDBLite consensus disorder prediction 185 199 - -
Seca10g00234 199 MobiDBLite consensus disorder prediction 10 26 - -
Seca10g00234 199 PANTHER RNA-BINDING PROTEIN 8A 7 198 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Seca10g00234 199 MobiDBLite consensus disorder prediction 64 84 - -
Seca10g00234 199 CDD RRM_RBM8 87 174 IPR033744 GO:0003729
Seca10g00234 199 SMART rrm1_1 94 167 IPR000504 GO:0003723
Seca10g00234 199 PRINTS RNA binding motif protein 8 family signature 47 59 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Seca10g00234 199 PRINTS RNA binding motif protein 8 family signature 158 170 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Seca10g00234 199 PRINTS RNA binding motif protein 8 family signature 140 156 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Seca10g00234 199 PRINTS RNA binding motif protein 8 family signature 84 98 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Seca10g00234 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 164 IPR000504 GO:0003723
Seca10g00234 199 SUPERFAMILY RNA-binding domain, RBD 86 197 IPR035979 GO:0003676
Seca10g00234 199 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00234 Seca-Chr10 2045646 2048517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00234 95 169 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 1.02e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00234 K12876 - gmx:100778595 336.265