Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00231 ATGAATATGAGAAAGAAAAAGAGTTTAGCAAGTCTTCAGTACAATTGGTTGCTCCTGCACAGTTTGATGGTGGTGGCATGGATGGTTCAGGGCCTCGTTTGGCTAATCCATCCTCACAAGCAATTTGGGGATGATAAAAACTTAAATAGCCAGCATCAGAAATATAAGACTATAGATGAAAAAAAGCCACTAATGAGTAGAATACTTAGTGTGCAACATTGTGTAGGACAACACATTGATGCTGGTTGGCCAATATGGTTATCTTCAGTGGCAGGAGAAGCCATCAAAGGGTGGGTGCCTCGACGGGCAGACTCTTTTGAAAAATTAGACCAAATTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCTTGACCTTGAAACTGGTAAATATGTGGCTTTGAAGAAAGTTCGTTTTTCAAGTACAGATCCAGAAAGTGTGCGTTTCATGGCAAGGGAAATCTATATATTGCGTCAACTTGACCATCCTAATGTCATCAAACTTGAAGGTCTTGTCACATCAAGCACCTCCACCAGTTTGTACCTTGTTTTAGAGTACATGGAGCATGACCTTGCTGGTCTAGCAGCTACGCCTGGCGTAAAATTCACTGAGGCACAGATTAAATGTTACATGAAGCAACTGCTTTGTGGGCTTGAACACTGTCATAATAGGGGTGTGCTGCACCGTGATATCAAGGGTTCAAATCTTCTGCTTGACAACAATGGAAATCTTAAGATTGGGGATTTTGGTCTTGCAACTGTTTATGAACCTGATAAAAAGCAGCCTTTGACTAGCCGTGTTGTGACTCTGTGGTACAGAGCACCTGAACTTTTGCTAGGTGCTACAGACTATGGAGCTGCAATTGACTTGTGGAGTGTTGGTTGCATTCTAGCAGAATTGCTGGTGGGGAAGCCAATCATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAGATATTTAAACTTTGTGGATCCCCATCAGAAGAGTATTGGAAGAGAACAAAATTTCCGCATGCAACAAGTTTTAAACCACAACACCGTTACAAACGCCAAGTGGCTGACACATTTAAAAGCTTTTCTTCTGTGGCATTGGCTCTTGTTGATAAGCTCCTTGCCATAGAACCAGACCATCGAGGTTCTTCAACTTCTGCACTCAACAGTGAGTTCTTCACTACAAACCCCCTTCCTTGTGATCCATCAAGTTTACCAAAGTTTCCACCAAGCAAGGAATTTGATGCCAAGCGCCGAGATAAGGAAGCAATAAGGTACTCTAAGAGCATGTTTGGTTTACACAGAAAAAACACAGAAGCTGTTAAAGGACGTGGACCGGTATCTGTTTTAAGGGGAGCAGGAGATACCAAAGTAATGGAAACACCAGAGTATAATGCAAGAGGAGATATATCTATGCGGGGGAAGACAAATAGTAGAATGTCCCACTCCCATCTCAAATATGAAACCCAGGAGGATGGTGGGTCTCACCACAAGTGTGAGCCTACTAGAGTATCCTTACAGAATGGCTATACACATTCTTCTTCAATGATGCACGGTGGTACAGCAGGACCATACTCATTGAATAAGAGGCCAGAAACATCTAAGAAGAATCCAGAGTTACGGAAACAGAGTTCTCTTTTGAATCAGGAAGCAGCAGATTTCTCTAACTCTTCTACTAAAAAGGAACCAAGCCGAGAACTTGGAATGGGGTATGTGCCTAAGAAGAATAGGATCCATTGCTCTGGACCATTGGTGCCTCCGGGTGGGAACATTGATGACATGCTCAGAGAGCATGAACGGTTAATGCAAGATGTTTTCCGTAGTGTCAAGAAAGCCAATCAAGAAAAACAGTGA 1845 0.4287 MNMRKKKSLASLQYNWLLLHSLMVVAWMVQGLVWLIHPHKQFGDDKNLNSQHQKYKTIDEKKPLMSRILSVQHCVGQHIDAGWPIWLSSVAGEAIKGWVPRRADSFEKLDQIGQGAYSSVHKALDLETGKYVALKKVRFSSTDPESVRFMAREIYILRQLDHPNVIKLEGLVTSSTSTSLYLVLEYMEHDLAGLAATPGVKFTEAQIKCYMKQLLCGLEHCHNRGVLHRDIKGSNLLLDNNGNLKIGDFGLATVYEPDKKQPLTSRVVTLWYRAPELLLGATDYGAAIDLWSVGCILAELLVGKPIMPGRTEVEQMHKIFKLCGSPSEEYWKRTKFPHATSFKPQHRYKRQVADTFKSFSSVALALVDKLLAIEPDHRGSSTSALNSEFFTTNPLPCDPSSLPKFPPSKEFDAKRRDKEAIRYSKSMFGLHRKNTEAVKGRGPVSVLRGAGDTKVMETPEYNARGDISMRGKTNSRMSHSHLKYETQEDGGSHHKCEPTRVSLQNGYTHSSSMMHGGTAGPYSLNKRPETSKKNPELRKQSSLLNQEAADFSNSSTKKEPSRELGMGYVPKKNRIHCSGPLVPPGGNIDDMLREHERLMQDVFRSVKKANQEKQ. 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00231 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Seca10g00231 614 FunFam probable serine/threonine-protein kinase At1g54610 189 428 - -
Seca10g00231 614 Gene3D Phosphorylase Kinase; domain 1 93 188 - -
Seca10g00231 614 SUPERFAMILY Protein kinase-like (PK-like) 99 398 IPR011009 -
Seca10g00231 614 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Seca10g00231 614 MobiDBLite consensus disorder prediction 537 560 - -
Seca10g00231 614 SMART serkin_6 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00231 614 FunFam probable serine/threonine-protein kinase At1g54610 93 188 - -
Seca10g00231 614 Gene3D Transferase(Phosphotransferase) domain 1 189 427 - -
Seca10g00231 614 CDD STKc_CDK9_like 106 390 - -
Seca10g00231 614 MobiDBLite consensus disorder prediction 464 565 - -
Seca10g00231 614 MobiDBLite consensus disorder prediction 498 528 - -
Seca10g00231 614 MobiDBLite consensus disorder prediction 478 496 - -
Seca10g00231 614 Pfam Protein kinase domain 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00231 614 PANTHER CELL DIVISION PROTEIN KINASE 104 396 - -
Seca10g00231 614 Coils Coil 592 612 - -
Seca10g00231 614 ProSiteProfiles Protein kinase domain profile. 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00231 Seca-Chr10 2027210 2032455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00231 98 586 Core Cell Cycle Gene Families AT5G10270 41.667 4.03e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca10g00231 Pkinase 1.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00231 K08819 - gmx:100791743 823.928