Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00228 ATGAGTCGAAGTTCAGGGCTGCTTGGAACAAACACAAATCATGGGAACAACAAGTTTAAAGGAGTACGACGTCGTAAGTGGGGCAAATGGGTATCAGAGATTCGTGTTCCTGGCACACAAGAACGCTTGTGGTTGGGAACCTATGCCACACCAGAGGCTGCAGCGGTTGCACATGATGTTGCTGTCTATTATCTCAGAAAGCCTTCTACTTTGGACAAACTCAACTTTCCTGAGACATTGTCTTCTTACTGTCTTCAGCAGAGGGACATGTCCCCAAGCTCTGTTCAGAAAGTGGCTTCAGATGTTGCCATGGATGTTGATGCGCGGAACATCTCAGGCAATTCTGCAGAAGAAACGAAGAAAACTGATGATGATATCCACAACGGTAGTGTAGCTGAACAAGTGTTTTGGTGGGAAGATTTGGGTAGTGATGATTGTGAGACTTGGGAGGGATTAACTCAAGAATATTGTAGACAACAAGGGGAGGAGGAGGCCTTGAGCATTTCCATTGAAGATTATCTTTAG 525 0.4533 MSRSSGLLGTNTNHGNNKFKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYYLRKPSTLDKLNFPETLSSYCLQQRDMSPSSVQKVASDVAMDVDARNISGNSAEETKKTDDDIHNGSVAEQVFWWEDLGSDDCETWEGLTQEYCRQQGEEEALSISIEDYL. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00228 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 121 - -
Seca10g00228 174 Gene3D AP2/ERF domain 17 79 IPR036955 GO:0003700|GO:0006355
Seca10g00228 174 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Seca10g00228 174 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Seca10g00228 174 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Seca10g00228 174 CDD AP2 18 52 IPR001471 GO:0003700|GO:0006355
Seca10g00228 174 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Seca10g00228 174 ProSiteProfiles AP2/ERF domain profile. 18 77 IPR001471 GO:0003700|GO:0006355
Seca10g00228 174 SMART rav1_2 18 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00228 Seca-Chr10 2015987 2016511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00228 17 174 AP2-EREBP Transcription Factor Family AT1G71520 45.000 1.86e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca10g00228 AP2 1.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00228 - - aprc:113869965 204.527