Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00221 ATGGACATGCCTTCTTCAAGTTCAACCCACTCTAATTCTACTACTGGTGCTGCTACTTCTTCATACAGAGGTGTCCGCAAGAGGAAATGGGGGAAATGGGTCTCTGAAATCCGCGAACCTGGCACTAAGACCAGAATTTGGTTAGGAAGCTTCGAGACCCCTGAGATGGCTGCTGCTGCATACGACGTCGCTGCGTTGCATTTCAGGGGACGTGAAGCCAGGCTTAACTTCCCTGAACTCGCAACTACTCTTCCTCGTCCCATAAGCAACAATGCTGACCACATACGCATGGCGGCGCACGAGGCTGCTTTAAGGCTTAGGACCAACACGGTGGCGCCGGAGACTGGTGGCTCCGCCGGTTCAACCACCGGGGCACCACTGACGGTTAGACTCTCCCCGACTCAAATTCAGGCCATCAATGACTCGCCTCTTGACTCACCACCGACGTGGATGCAAATGTCACATCCTTTCATGTTTGATGATCAGTCCATGATGTTTGCAAATGGGTATGAGTTTGAGGAAAACGAGTGGGAGGATATACACACTGAATCTCTTTGGGATCCTTAA 567 0.515 MDMPSSSSTHSNSTTGAATSSYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGREARLNFPELATTLPRPISNNADHIRMAAHEAALRLRTNTVAPETGGSAGSTTGAPLTVRLSPTQIQAINDSPLDSPPTWMQMSHPFMFDDQSMMFANGYEFEENEWEDIHTESLWDP. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00221 188 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Seca10g00221 188 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Seca10g00221 188 MobiDBLite consensus disorder prediction 1 21 - -
Seca10g00221 188 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Seca10g00221 188 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Seca10g00221 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 121 - -
Seca10g00221 188 MobiDBLite consensus disorder prediction 1 22 - -
Seca10g00221 188 CDD AP2 20 80 IPR001471 GO:0003700|GO:0006355
Seca10g00221 188 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Seca10g00221 188 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Seca10g00221 188 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Seca10g00221 188 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00221 Seca-Chr10 1950974 1951540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00221 20 188 AP2-EREBP Transcription Factor Family AT1G71450 61.765 1.16e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca10g00221 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00221 - - aprc:113869810 317.775