Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00220 ATGGAAGAAGCAAGAAGAAGCACTAAAATTAATGATAATGAAGAAGAAGGTGCATTGATTTCGTATCGAGGAGTACGGAAGCGAAAGTGGGGGAAATGGGTGTCAGAAATAAGGGAGCCAGGGAAGAAAAGCAGAATTTGGTTAGGGAGTTATGAGGAACCCCAAATGGCAGCAGCAGCATATGATGTAGCCGCGTTGCACCTCAAAGGACGCGCAGCAAGGCTCAACTTTCCCCAATTTGTTGACACTATGCCTCGTCCAGCATCCTCTAAACCTGAAGATGTCAGACTCGCAGCTCAACAAGCAGCATTGCTCTTCAGGAGAAGACCATCATCTGATCATCAGGGAAGTGGCAACAACAACAATAAAAGTAGTGTGGTTCCTGCAGTGAGGGTGGGGTTATCACCCACTCAAATTCAGGCCATCAATGAGTCCCCTTTGGATTCACCAAAGATGTGGATGCAAATGGCTGAGGCACTCATGTTTGGCTTTGATGATCATCATATGATGCTGTATTGTGGTCATGATGATCATGATGTCTTAGAGTTGAGTGGATGGGAAGAAATTCAGTATGACTCCTTGTGGGACTCCTGA 594 0.4579 MEEARRSTKINDNEEEGALISYRGVRKRKWGKWVSEIREPGKKSRIWLGSYEEPQMAAAAYDVAALHLKGRAARLNFPQFVDTMPRPASSKPEDVRLAAQQAALLFRRRPSSDHQGSGNNNNKSSVVPAVRVGLSPTQIQAINESPLDSPKMWMQMAEALMFGFDDHHMMLYCGHDDHDVLELSGWEEIQYDSLWDS. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00220 197 FunFam Ethylene-responsive transcription factor 2 21 79 - -
Seca10g00220 197 Pfam AP2 domain 22 70 IPR001471 GO:0003700|GO:0006355
Seca10g00220 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 152 - -
Seca10g00220 197 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Seca10g00220 197 CDD AP2 22 78 IPR001471 GO:0003700|GO:0006355
Seca10g00220 197 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Seca10g00220 197 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Seca10g00220 197 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Seca10g00220 197 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Seca10g00220 197 SUPERFAMILY DNA-binding domain 22 79 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00220 Seca-Chr10 1924363 1924956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00220 13 196 AP2-EREBP Transcription Factor Family AT1G71450 47.027 5.05e-52 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca10g00220 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00220 - - gmx:100788567 264.233