Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00203 ATGGTTCTACTTGTTTTGTTTATTTTCTTGAAGCCAAAAAGAATGGTCCAAGCTGCTGCAAGTATTTTAGAAACAAGTTTACATTCTTTTACTTATAAAGCATTGGAAGAAGCCACGTTGGGTTTTAGTGAAGAAGTAGGGAGGGGTTCGTTTGGTATTGTTTACAAAGGCAAACTAGATCATGTGGTTGCCGTCAAGAAATTTGACAGATTAGCAGAAGAAGGAAGAGATAAGGAATTTAAGACTGAGTTAAGTGCCATCAGTAAAACCTGCCACAAAAATCTGGTAAGGTTGATTGGATTTTGTGATGAGGGGATCCACAAACTTCTGGTCTATGAGTTCATGAGCAATGGCACTCTTGCAAACATCCTATTTGCACAATCCAAACCCATTTGGAATATAAGGGTTGGATTTGCTTTGGGGATTGCAAGAGGGTTGGTGTACTTACATGAAGAGTGTGACACTCCCATCATTCATTGTGATATAAAACCTCAAAATGTACTCATAGATGACCATTTCACTGCAAAGATCTCTGATTTTGGGTTGGCCAAGTTGTTATTGTTGAACCAAAGTAGAACCAATACCATGATACGAGGAACTAAAGGGTATGTGGCACCTGAATGGTTCAAGAATGTTCCTGTGACGGTTAAAGTGGATGTTTATAGCTTTGGTGTCATGTTGTTGGAAATCATTTGCTGCAGAAGAAATGTGTTGCTGATGGAGTCTCATGAGGAGAAGGCAATATTGTCAGATTGGGCTTATGATTGCTATATGGAAGGAAGAATAGATGCCTTGTTGGATGATGATGACAAGGAGGCTATGGCTGACCATGACAGGTTACAAAGGTGGGTAAAGATAGCAATTTGGTGCATTCAAGAGCATCATGAAATCAGGCCAACAATGGGGATGGTCATGCAAATGCTCCAAGGCTTTGTTCAAGTCCCTGATCCACCATCTCCTTCCCTCAATTAG 972 0.4033 MVLLVLFIFLKPKRMVQAAASILETSLHSFTYKALEEATLGFSEEVGRGSFGIVYKGKLDHVVAVKKFDRLAEEGRDKEFKTELSAISKTCHKNLVRLIGFCDEGIHKLLVYEFMSNGTLANILFAQSKPIWNIRVGFALGIARGLVYLHEECDTPIIHCDIKPQNVLIDDHFTAKISDFGLAKLLLLNQSRTNTMIRGTKGYVAPEWFKNVPVTVKVDVYSFGVMLLEIICCRRNVLLMESHEEKAILSDWAYDCYMEGRIDALLDDDDKEAMADHDRLQRWVKIAIWCIQEHHEIRPTMGMVMQMLQGFVQVPDPPSPSLN. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00203 323 ProSitePatterns Protein kinases ATP-binding region signature. 46 67 IPR017441 GO:0005524
Seca10g00203 323 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 14 319 - -
Seca10g00203 323 ProSiteProfiles Protein kinase domain profile. 40 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00203 323 SMART serkin_6 40 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00203 323 SUPERFAMILY Protein kinase-like (PK-like) 24 308 IPR011009 -
Seca10g00203 323 Gene3D Transferase(Phosphotransferase) domain 1 115 318 - -
Seca10g00203 323 FunFam S-receptor-like serine/threonine-protein kinase 10 114 - -
Seca10g00203 323 Gene3D Phosphorylase Kinase; domain 1 9 114 - -
Seca10g00203 323 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 115 316 - -
Seca10g00203 323 Pfam Protein kinase domain 43 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00203 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00203 Seca-Chr10 1799080 1800051 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00203 27 310 Receptor kinase-like Gene Family AT1G60800 40.411 1.59e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca10g00203 Pkinase 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00203 - - lja:Lj2g3v1989170.1 508.834