Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00192 ATGGAGGAAGGAAAGCATAAATCTAGAAAAGAAGACTATGAGGTAAAAGAAGGTGATTCTAAGAGGAGTCACCGTGATCGGGATCGTGATAGAACTGGAGAACGGAATAAGGATAGAAGTAATGGGAGGCACAGGGATAGGGATAGGGATAAGGAGAGGAGGGATCGTGAGTCACGACGGCATGAGAGAGAGAAGAGTAGTGATTCTGAAGACAGGTATGATAGAGACTGGGAGAAGCGCAAAGATAAAGATAAAGATAGGACACGAGTACAGGATGTGGATAGAGAAAAATCTCGAGGCAAAAAAAGGGAAAGAGATAGGGAAGACAGGGAAAGGGAGAGGACAGACAGAGTGAGGGAGAAAGAAAGAGAGAGGGAAAGAAAGGAGGATAAGGAGAGGAATAGGGAGAGAGAAAGGGAAAGGAGGGATCATGAGAGAGAGAAGGAAAAGGAAAGAGAAAGGGGAAGGAGAGTGCGTGAGAGGGAGAAATATAGGGATGTTGATAGTGATTACAGTGATGGTGAATCCAGGGAGAGAGATAGGAAGCGGCATAGGAAAGAGGATGACGATCACAAGGGGCGGGAGAGGGAAAGGAGTGCTAGCAAGTCAAACAGGAAAATTGAGGAACTTGAAACAAGCCCAAGGAAAAAGAGTGATGGAGATGACTCAGATACCAAAGATAAAGAGAGAAAACCTACCCGTGAAGAAGAGATGGAGGATGAACAAAGGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGGAGGAAGAAGGAAGAAGCTGAAAGAGAGAAGCATGGTGAAGCAAGTGCTAATGAACCTGAGTCTGGAAAGACCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACAGGTACTGGGAAGCAAAATACAGCTATGGATGTAGATGGAGATGACAAACCTGCTGCTAAGGAACCTATGGAGTCGATGGCGGTAGATGTTGATAATGAAACAGTTGCATCTGATTTACAAAATGGAGCTGCTGGTGCTCCTGCAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTTACCTCATCACTTTCTGATAAAGCTGCAGACTTGAAACCCAAGGATAAAGGGGATGAACGAAGTAATGGTACACAGTCAAAGAAAGGTACAAATAAATCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGGAGATCTTGAAGCTGAGGGGGACCCATTAGATGAAGATGATGATGAATTCATGAAAAGAGTGAAAAAGACAAAAGCTGAGAAGCTTTCTATAGTTGATCACTCAAAGATTGATTACGAACCATTCAAGAAGAACTTTTATATTGAAGTGAAGGAGATCTCAAAGATGACTCCTGAAGAAGCTGCAGTATATAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTGTAAAATCATGGCACCAAACTGGACTTACTAGCAAAATTTTGGAGACAATAAAGAAGCTGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCACTGCCTGTAATTATGAGTGGTCGAGATTGCATAGGCATTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTCCTGCCAATGTTGAGGCATATCAAAGATCAACCACCAGTTGTTGCAGGAGATGGTCCTATTGGGCTTATTATGGCCCCTACAAGAGAACTTGTTCAACAGATTCACAGTGATATAAAGAAGTTTACAAAGGTACTGGGTCTCAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGCAGTGGAAAAATAACTAACCTGCGCAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACACGAATTGTTCAGAATATTCGACCAGATCGTCAAACGGTTCTCTTCTCTGCTACTTTTCCCCGTCAAGTTGAAATTCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATAGCACAGCTAGTTGAGGTGAGGCCTGAAAATGAGAGGTTCCTTAGACTCTTGGAAATATTGGGAGAATGGTATGAGAAAGGAAAGATCTTAATATTTGTCCACTCACAGGAGAAGTGTGATGTTTTATTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAGGACCAGACAGACCGTGAATCCACAATTTCTGATTTTAAAAGCAATGTCTGCAATTTATTGGTTGCAACAAGTGTTGCTGCCAGGGGATTAGATGTCAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCAAACCACTACGAAGATTATGTACATCGTGTTGGGCGCACTGGCCGAGCTGGCCGAAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGATGCAAGATATGCACCAGATCTGGTGAAAGCCTTGGAGCTATCTGAGCAGATTGTTCCTGATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCAAAAGTGAATCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAAGCAGCAAAGAAAGCGCAAGCCAAAGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTCTTGCTCAGATTCTTGCTGCCACGAAAATGAACTCTACAGCAATGCCTACTCCTATCTCTGCTGCCCAGCTGATTTCAAATGGTGGACTACCTGTTTCTTTGCCAGCTGTTCTTGGTCTCCAGACGGCAACAGTCCTACCTGGGACAGGGCTACCCCTTGCTGCAAATGATGGGGCAGCTCGAGCAGCATTAGCTGCTATGAACCTGCAGCACAACTTGGCAAAAATACAATCCGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTAGGTGGAAAGTCACACACAAGGAAACTTTAGGCCCCATTTCGGAATGGACTGGAGCTGCCATTACCACTAGGGGGCAGTATTTCCCACCTGGCAAAATCCCAGGACCTGGGGAACGCAAACTCTACTTGTTCATTGAGGGTCCTAGTGAGCAGTCTGTTAAGAGAGCCAAAGCAGAATTGAAGCGTGTTTTGGAGGACATCACAAATCAAGCTTTGCAACTTCCTGGTGGAACTCAACCGGGCAAATACTCTGTTGTATAA 3426 0.4407 MEEGKHKSRKEDYEVKEGDSKRSHRDRDRDRTGERNKDRSNGRHRDRDRDKERRDRESRRHEREKSSDSEDRYDRDWEKRKDKDKDRTRVQDVDREKSRGKKRERDREDRERERTDRVREKERERERKEDKERNRERERERRDHEREKEKERERGRRVREREKYRDVDSDYSDGESRERDRKRHRKEDDDHKGRERERSASKSNRKIEELETSPRKKSDGDDSDTKDKERKPTREEEMEDEQRRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEASANEPESGKTWTLEGESDDEEGTGTGKQNTAMDVDGDDKPAAKEPMESMAVDVDNETVASDLQNGAAGAPADEEIDPLDAFMNSMVLPEVEKLNNAVTSSLSDKAADLKPKDKGDERSNGTQSKKGTNKSIGRIIPGEESDSDYGDLEAEGDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYEPFKKNFYIEVKEISKMTPEEAAVYRKQLELKIHGKDVPKPVKSWHQTGLTSKILETIKKLNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLEILGEWYEKGKILIFVHSQEKCDVLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKMNSTAMPTPISAAQLISNGGLPVSLPAVLGLQTATVLPGTGLPLAANDGAARAALAAMNLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIPGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGTQPGKYSVV. 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00192 1141 PANTHER RNA HELICASE 450 925 - -
Seca10g00192 1141 MobiDBLite consensus disorder prediction 375 435 - -
Seca10g00192 1141 Coils Coil 235 272 - -
Seca10g00192 1141 CDD SF2_C_DEAD 724 854 - -
Seca10g00192 1141 MobiDBLite consensus disorder prediction 1 280 - -
Seca10g00192 1141 MobiDBLite consensus disorder prediction 1 319 - -
Seca10g00192 1141 Coils Coil 111 161 - -
Seca10g00192 1141 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 658 666 IPR000629 -
Seca10g00192 1141 Gene3D - 455 712 IPR027417 -
Seca10g00192 1141 MobiDBLite consensus disorder prediction 418 434 - -
Seca10g00192 1141 MobiDBLite consensus disorder prediction 919 933 - -
Seca10g00192 1141 CDD DEADc_DDX46 492 713 - -
Seca10g00192 1141 SMART helicmild6 764 845 IPR001650 -
Seca10g00192 1141 FunFam probable ATP-dependent RNA helicase DDX17 465 715 - -
Seca10g00192 1141 CDD KH-I_AtRH42_like 1039 1140 - -
Seca10g00192 1141 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 503 531 IPR014014 GO:0003724
Seca10g00192 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 885 IPR027417 -
Seca10g00192 1141 Pfam DEAD/DEAH box helicase 528 699 IPR011545 GO:0003676|GO:0005524
Seca10g00192 1141 SMART ultradead3 522 727 IPR014001 -
Seca10g00192 1141 Gene3D - 713 887 IPR027417 -
Seca10g00192 1141 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 884 IPR001650 -
Seca10g00192 1141 MobiDBLite consensus disorder prediction 382 399 - -
Seca10g00192 1141 Pfam Helicase conserved C-terminal domain 737 845 IPR001650 -
Seca10g00192 1141 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 712 IPR014001 -
Seca10g00192 1141 Coils Coil 1105 1128 - -
Seca10g00192 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 714 IPR027417 -
Seca10g00192 1141 MobiDBLite consensus disorder prediction 919 950 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00192 Seca-Chr10 1757390 1760815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00192 490 865 Eukaryotic Initiation Factors Gene Family AT3G19760 32.632 2.75e-58 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00192 K12811 - gmx:100784306 1664.05