Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00175 ATGGATCCTTTTGATGATATTCTGCCTGGGGCTCCTGCTGCACGTGCTCGGCCAGGTGGCAAGTTCATGCCAAAGGCCAAATCGAAACAGCTGCCCCGAAAGGAAATATCAGAACACGCAACCTCATCGAGAGATGGAAAGAACACACATGTTGCTTCATCATCCACTGGGACAGACTCCAAAGGAATTTCTCAGAATGAATGTAATGCAGTTACTTCAACGTTAAGTACATCAGCAGAAGAATCGATGAGGTCCCATCATCGTCCAAAGGTACTTCCAAATTTGGAGGATGTCACAAATTCTGAAATAGGAAATCCTCAACAAGTTAGCGTAAACAGAGATACTGCAGCCTTAGTGGATGATCTGCCTTCCATGACTGGAGTATCTGAAGTTGATTCTAATCAGAATTTTACAAACTTTACTGAATCAGCTTCTGAGGCAGATCCTGTAGGTTTTGAGGTGGGATCAGTCACTAACTTCATTCGTAAGACCGATCTTAACAGTGGTACAAGACAACCAGTTCACCCTGCCAATGCTGTAGAAAATGTATTGAATAATATGACTGCTCCGTCTACAACATGCTCAACCATAGGTAGGATGGAAGAACCACCTAACAGTGGGCAAGGTTCAGTTCTTGATAGCAACAGGAGCTTGGAACTTATTGATAATTCAGTGCAAGCTAACCCAGATAAGGTTGCAATATTTGAGAGCAACGTTCATTCAGATTTTAACTTTGGAAGAGAACAAGAGGTAGTGTCTGCAGAATTTGAATTGGATCCTTTCAGCAATGTCCTCCCTGATCCTGGCACTAGGAATGCTCATAAGTTTCAACCCAAGATTAAGCCCCGACCAAGAGTAGGCAATGCACCAGCTATTGCTTCTGCTTCAACTAGTGTTATGGAAAAATCTATTGGGTTGCCTACTACTTGTACAAATGAGGTTCAATCTTTTCAGTCTAGTGGTGATGGTAGTGGCGGACTAAACCGACCAACCAGTTTACCTTTAACCACATCAGAGATTGTTAAGACAACTGATTTATCCAATAAGTTTGATTATATGAGCTCGAGTACTCCATTCTCTGAAGACAACAGAAGCTTGGCAGCAGTAATTCCTTCCCAATCAGATTCCCTAAATGCTATGCTTTCAGAGGTTGTGGTTCATAATGGAACTAGAGATTGGCCCTCTAGCTTTGGTAAATCACCTGGAGAGATTTTGTATCAACAGACTGCAGACATTTTCTCAGGGCTGGAATCCCTTGATGACTTCCTCACCCAAGCTGCCACGGATACAGGAAAACCATCTCTTCATGCTTTCAATGAGAAGGGTACGGAGGAAAATTTTGTCATTCCAGCTTGTACTTCTATTAACTCTTTTGGGGTACGTGATACTACCCAAGTTCAAAGGTGTCCTGGCCCCGAGTATCATACCACCCCAGATTCGTTATCCTTCGATGAAGCTGCAGTCCTCAATAAGGATAATACTCACACAAACAATAGAAGGTCGGAAACAGAGGAAGTTGTGGACTTGAATCCTGTCTGCCCAGTTGACGATGTATTTGATTATCAATCCATGAAATCTGGCACAGATCCAACTTCTGAAATTCCAGTGCATGAAGAATTGACAAATTCTGCAGATAGTCCCACATTGGCTGATCTTTTGCATCAGCATGTTACTGAAGAAAAAGAAGATGCTAACGGGAGAAAAAAGGATGGCACAATGTCAAGTTCTCTAAGGAAGCGTGGGAGATCTTCAATAACTGGCGAGGAGGGTAAAGGTGGTAAAACATCAAGGCAGCTGAGAAAACAAGCAGCTCATAAACCTGCTAAATACTCATTGAATGAGGATGTTGAGGATGATGATGACCTTGACCCTCCTTATAATTGTAATATAGATGAACTTCAAGAAAATGGTGATGACTATGAAGTGGATTATTCGTCCAAGAAGAAAAGAGTGTCAACAAGTTCAAAGAAGAAGTCTGCAGCTAAAAATGGAAAGACATCTCAAAAGCGTAAAAAGGCTGATGATGATTTAGAAAAAACTACTAAAGAACCTCCAAAAAAGTTCTCTCATTCAACCCGACGAAAAAAAAGATGTGTTGACAAGGCTCTGCTGGAAATTCCTGAGGATGAACTTGATCCTCGAACCTTGCCCATTAAGGATATCATTTTACTTGCAGAATATAGAGAGCGGCTGGCGAAAAAGGAGGCAACAACTTCAAAAACATCTTCCACCAATCAAAGTGGTGGAGATTTTCTACATGAGGCTGATGCTAATGATGAAGAGGAGATATTTGGATCAGAAGATGGTAGAGACCCAGGTGATGATCAAGCCAGTGAAGAGATTCCATTAGCTCCCTCTTTATTTAATTACCAGTCTTTCATGGACAAGGCACCTAGGGGGAAATGGTCAAAACAAGATACTGAACTGTTTTATGAGGCTGTTAGAGAGTTTGGCACAGATTTTTCTATGATACAACAACTTTTTCCTGGTCGAACACGTCATCAAATTAAGTTGAAGTACAAGAAGGAAGAGCGGCAGCATCCTTTACAGTTATCTGATGCTCTAAATAATCGTGCAAAAGATCACCCGCATTTTAAATTGGTGATTGAGCGACTACAACAAGCTTCTACCAAGGCAGAACAAGACCCTGGCAAAGATGCCTCAGATTTCATGACTGGGGAGGAGGTTGAGGAACCGATACCTGAAACTAATGAGGAGGTTGCACCAACTAAGCAGGACACCGATGTTAAAGATCAGGAAGGTCCTGTGGAATTTCATAGTCCAGAGCAATCTGAAGATAGTGATGATGACTTTCAAAGATGGTCTCAATATAAAAGTGATTATTAG 2847 0.4173 MDPFDDILPGAPAARARPGGKFMPKAKSKQLPRKEISEHATSSRDGKNTHVASSSTGTDSKGISQNECNAVTSTLSTSAEESMRSHHRPKVLPNLEDVTNSEIGNPQQVSVNRDTAALVDDLPSMTGVSEVDSNQNFTNFTESASEADPVGFEVGSVTNFIRKTDLNSGTRQPVHPANAVENVLNNMTAPSTTCSTIGRMEEPPNSGQGSVLDSNRSLELIDNSVQANPDKVAIFESNVHSDFNFGREQEVVSAEFELDPFSNVLPDPGTRNAHKFQPKIKPRPRVGNAPAIASASTSVMEKSIGLPTTCTNEVQSFQSSGDGSGGLNRPTSLPLTTSEIVKTTDLSNKFDYMSSSTPFSEDNRSLAAVIPSQSDSLNAMLSEVVVHNGTRDWPSSFGKSPGEILYQQTADIFSGLESLDDFLTQAATDTGKPSLHAFNEKGTEENFVIPACTSINSFGVRDTTQVQRCPGPEYHTTPDSLSFDEAAVLNKDNTHTNNRRSETEEVVDLNPVCPVDDVFDYQSMKSGTDPTSEIPVHEELTNSADSPTLADLLHQHVTEEKEDANGRKKDGTMSSSLRKRGRSSITGEEGKGGKTSRQLRKQAAHKPAKYSLNEDVEDDDDLDPPYNCNIDELQENGDDYEVDYSSKKKRVSTSSKKKSAAKNGKTSQKRKKADDDLEKTTKEPPKKFSHSTRRKKRCVDKALLEIPEDELDPRTLPIKDIILLAEYRERLAKKEATTSKTSSTNQSGGDFLHEADANDEEEIFGSEDGRDPGDDQASEEIPLAPSLFNYQSFMDKAPRGKWSKQDTELFYEAVREFGTDFSMIQQLFPGRTRHQIKLKYKKEERQHPLQLSDALNNRAKDHPHFKLVIERLQQASTKAEQDPGKDASDFMTGEEVEEPIPETNEEVAPTKQDTDVKDQEGPVEFHSPEQSEDSDDDFQRWSQYKSDY. 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00175 948 MobiDBLite consensus disorder prediction 263 287 - -
Seca10g00175 948 MobiDBLite consensus disorder prediction 737 751 - -
Seca10g00175 948 MobiDBLite consensus disorder prediction 667 687 - -
Seca10g00175 948 ProSiteProfiles Myb-like domain profile. 794 844 IPR001005 -
Seca10g00175 948 CDD SANT 801 842 IPR001005 -
Seca10g00175 948 SMART sant 798 846 IPR001005 -
Seca10g00175 948 FunFam Predicted protein 802 881 - -
Seca10g00175 948 MobiDBLite consensus disorder prediction 1 66 - -
Seca10g00175 948 MobiDBLite consensus disorder prediction 734 782 - -
Seca10g00175 948 MobiDBLite consensus disorder prediction 908 948 - -
Seca10g00175 948 SUPERFAMILY Homeodomain-like 800 848 IPR009057 -
Seca10g00175 948 Coils Coil 630 650 - -
Seca10g00175 948 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 794 850 IPR017930 -
Seca10g00175 948 Pfam Myb DNA-binding like 792 875 IPR039467 -
Seca10g00175 948 MobiDBLite consensus disorder prediction 558 695 - -
Seca10g00175 948 Gene3D - 802 864 - -
Seca10g00175 948 MobiDBLite consensus disorder prediction 28 45 - -
Seca10g00175 948 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 17 948 - -
Seca10g00175 948 MobiDBLite consensus disorder prediction 871 948 - -
Seca10g00175 948 MobiDBLite consensus disorder prediction 651 666 - -
Seca10g00175 948 MobiDBLite consensus disorder prediction 316 336 - -
Seca10g00175 948 MobiDBLite consensus disorder prediction 558 587 - -
Seca10g00175 948 ProSiteProfiles SANT domain profile. 801 845 IPR017884 -
Seca10g00175 948 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00175 Seca-Chr10 1623509 1631182 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca10g00175 Myb_DNA-bind_7 4.4e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00175 K15198 - gmx:100792788 1111.29