Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00174 ATGTTATGCATGTTTATGGATTTTGATGGAGCCTGGTTTCTATCATTAAGATTTATTGCCAAGCCTATTGGTAAGCAACTTGCCAAGATGGGAACACAACCCCAGCAAGCATGTCGGGAGGAGGAGGAGGAGGAACTGCCAGGTCGAGGAGCTACAATTTCTGGTCAGTCAATGTCAACAAGTAGAAGTGTCGGGTCGCCATCCAGCCGGAGCGAGCAGACAATGGCAACACCAGTAAATGATAACACTTTTCTTAGATTAAACCGTCTTGACATACATGGTGACGATGCTGGAACACAGGGCGCAGTTGCTAGCAAGAAGAAAAAGAGAGGCCAACGTGCTGTTGGAGGTGATAAGAGTGGGAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGTGAAAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCAGATGAACTTGTGGCTGAATTTGCTGATCCAGGCAATAGTGTTTCATCGCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAAGATATACAGTGGAAGGGTCTTCCTCACACTAGTCTGAATGATATTGAAGAACTAAAGGCAGAGCGTCTGGGGCTGAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAACTGGAGGACCAATACATAGGTCTTCAGAACCTTATACAACGAAATGAGCAATTATATAGCTCAGGAAATGCTCCCAGTGGAGGGGTGTCTTTGCCTTTTATTCTTGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGACAACTATGTTCTCAAGGCAATGAAATTCTGTGATAGACCTCAGAATGATAATGTAACACATAATCCTACAGATGGAGGTGAAGGTTCTAGCATGTCAGGCTTGTATCATGCTCAGGTTCCTACCCTAGTTTCAAACCCGCCAGTTAGGCCTCCCTCGTCCCCACCACTCCCTGGAATATTAAAGGCAAGAGTTAAGAACGAACATTGA 1116 0.4382 MLCMFMDFDGAWFLSLRFIAKPIGKQLAKMGTQPQQACREEEEEELPGRGATISGQSMSTSRSVGSPSSRSEQTMATPVNDNTFLRLNRLDIHGDDAGTQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVSSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKDIQWKGLPHTSLNDIEELKAERLGLRNRIEKKAAYLQELEDQYIGLQNLIQRNEQLYSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQNDNVTHNPTDGGEGSSMSGLYHAQVPTLVSNPPVRPPSSPPLPGILKARVKNEH. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00174 371 SMART DP_2 209 369 IPR014889 -
Seca10g00174 371 MobiDBLite consensus disorder prediction 317 342 - -
Seca10g00174 371 CDD DP_DD 207 310 IPR014889 -
Seca10g00174 371 Gene3D Transcription factor DP 208 330 IPR038168 -
Seca10g00174 371 PANTHER TRANSCRIPTION FACTOR DP 51 325 IPR015648 GO:0005667|GO:0051726
Seca10g00174 371 SMART E2F_TDP_2 119 202 IPR003316 GO:0005667|GO:0006355
Seca10g00174 371 MobiDBLite consensus disorder prediction 317 371 - -
Seca10g00174 371 Pfam E2F/DP family winged-helix DNA-binding domain 122 202 IPR003316 GO:0005667|GO:0006355
Seca10g00174 371 Coils Coil 218 252 - -
Seca10g00174 371 MobiDBLite consensus disorder prediction 52 82 - -
Seca10g00174 371 Pfam Transcription factor DP 210 325 IPR014889 -
Seca10g00174 371 PIRSF Txn_factor_DP 27 371 IPR015648 GO:0005667|GO:0051726
Seca10g00174 371 FunFam Transcription factor-like protein DPB 114 207 - -
Seca10g00174 371 MobiDBLite consensus disorder prediction 31 82 - -
Seca10g00174 371 SUPERFAMILY E2F-DP heterodimerization region 208 325 IPR037241 -
Seca10g00174 371 MobiDBLite consensus disorder prediction 96 122 - -
Seca10g00174 371 Gene3D - 114 207 IPR036388 -
Seca10g00174 371 FunFam Transcription factor-like protein DPB 208 332 - -
Seca10g00174 371 SUPERFAMILY "Winged helix" DNA-binding domain 122 203 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00174 Seca-Chr10 1616638 1621122 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00174 108 318 E2F-DP Transcription Factor Family AT5G02470 52.830 5.10e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca10g00174 DP 2.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00174 K04683 - zju:107414839 568.155