Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00173 ATGGCAGCTTTGCGAGAAATTTTTGGAGCCTTAATCTCTCCGTCAAAGCAACATGCTTCTCTCTGTCAATTTATCTTCCTCAGAAGAATGACTTCCAAGATTTTTGTTAAAGGTTTAGCATTTTCTACTACAGAGGAGAAATTAGCCGAAGCTTTTTCTCAATATGGCAAAGTCCTGAAAGCTGATATAGTGCTGAATAAAGCTAAAAATAGATCCAAAGGCTTTGGGTATGTGACTTTTGCTAAGGAGGAAGAAGCCCGCAAGGCACAGATTGACATGAATAGAAAGGCCAGGATCTACTAA 303 0.3927 MAALREIFGALISPSKQHASLCQFIFLRRMTSKIFVKGLAFSTTEEKLAEAFSQYGKVLKADIVLNKAKNRSKGFGYVTFAKEEEARKAQIDMNRKARIY. 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00173 100 Gene3D - 13 98 IPR012677 -
Seca10g00173 100 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 96 IPR000504 GO:0003723
Seca10g00173 100 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 100 IPR000504 GO:0003723
Seca10g00173 100 SUPERFAMILY RNA-binding domain, RBD 32 96 IPR035979 GO:0003676
Seca10g00173 100 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 95 - -
Seca10g00173 100 SMART rrm1_1 33 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00173 Seca-Chr10 1608425 1611708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00173 34 89 C2H2 Transcription Factor Family AT2G19380 41.071 1.52e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00173 - K13195 gmx:100527061 134.806