Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00172 ATGTCAAAACCTAGGCGGAGCGTGCTGGTATCTTCCGCTACATACACACCCACACTTGGTCCGGTGGTCCCCTTCTTCATCTTCAAAGACCTTAGCTATTCCATTCTCTGCTTCTGCGGACCATACTGCACAACGTCTTTGGGAATTTTCAGGCTTACCTTAAAACTCCTGTTCAATAGAACTCAGTTTCTATCATTAAGATTTATTGCCAAGCCTATTGGTAAGCAACTTGCCAAGATGGGAACTCAACCCCAGCAAGCATGTCGGGGGGAAGAGGAGGAGGAACTGCCAGGTCGAGGAGCTACAATTTCTGGTCAGTCAATGTCAACAAGTAGAAGTGTCGGGTCACCATCCAGCCGGAGCGAGCAGACAATGGCAACACCAATAAATGATAACACTTTTCTTAGATTAAACCATCTTGACATACATGGTGACGATGCTGGATCACAGGGCGCAGTTGCGAAGAAAAAGAGAGGCCAACGTGCTGTTGGAGGTGATAAGAGTGGGAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCAGATGAACTTGTGGCTGAATTTGCTGATCCAGGCAATAGTGTTTCAACCCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCTATGGATATTATTTCTAAGGATAAAAAAGATATACAATGGAAGGGTCTTCCTCGCACTAGTCTGAATGATATTGAAGAACTAAAGGCAGAGCGTCTAGGGCTGAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAACTGGAGGACCAATATCTGTTTGTTAACTTCTTGTTTTACTTTCTCAAGTACTTAGGTCTTCAGAACCTTATACAACGAAATGAGCAATTATATAGCTCAGGAAATGCTCCCAGTGGAGGGGTGTCTTTGCCTTTTATTCTAGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGACAACTATGTTCTCAAGGCAATGAAATTCTGTGATAGACCTCAGAATGATAATGTAACACATAATCCTACAGATGGAGGTGAAGGTTCTAGCATGTCAGGCTTGTATCATGCTCAGGTTCCTACCTTAGTTTCAAACCCGCCAGTTAGGCCTCCCTCGTCCCCACCACTCCCTGGAATACTAAAGGCAAGAGTTAAGAATGAACACTGA 1296 0.4383 MSKPRRSVLVSSATYTPTLGPVVPFFIFKDLSYSILCFCGPYCTTSLGIFRLTLKLLFNRTQFLSLRFIAKPIGKQLAKMGTQPQQACRGEEEEELPGRGATISGQSMSTSRSVGSPSSRSEQTMATPINDNTFLRLNHLDIHGDDAGSQGAVAKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKDIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEDQYLFVNFLFYFLKYLGLQNLIQRNEQLYSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQNDNVTHNPTDGGEGSSMSGLYHAQVPTLVSNPPVRPPSSPPLPGILKARVKNEH. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00172 431 Coils Coil 266 286 - -
Seca10g00172 431 SMART DP_2 257 429 IPR014889 -
Seca10g00172 431 CDD DP_DD 255 370 IPR014889 -
Seca10g00172 431 Pfam Transcription factor DP 258 385 IPR014889 -
Seca10g00172 431 FunFam Transcription factor-like protein DPB 256 392 - -
Seca10g00172 431 SMART E2F_TDP_2 167 250 IPR003316 GO:0005667|GO:0006355
Seca10g00172 431 Gene3D Transcription factor DP 256 390 IPR038168 -
Seca10g00172 431 PANTHER TRANSCRIPTION FACTOR DP 101 385 IPR015648 GO:0005667|GO:0051726
Seca10g00172 431 SUPERFAMILY "Winged helix" DNA-binding domain 170 251 IPR036390 -
Seca10g00172 431 MobiDBLite consensus disorder prediction 146 170 - -
Seca10g00172 431 SUPERFAMILY E2F-DP heterodimerization region 256 385 IPR037241 -
Seca10g00172 431 Gene3D - 163 255 IPR036388 -
Seca10g00172 431 MobiDBLite consensus disorder prediction 377 396 - -
Seca10g00172 431 MobiDBLite consensus disorder prediction 102 130 - -
Seca10g00172 431 FunFam Transcription factor-like protein DPB 162 255 - -
Seca10g00172 431 MobiDBLite consensus disorder prediction 81 130 - -
Seca10g00172 431 Pfam E2F/DP family winged-helix DNA-binding domain 170 250 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00172 Seca-Chr10 1604184 1608853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00172 153 378 E2F-DP Transcription Factor Family AT5G02470 49.780 2.49e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca10g00172 DP 2.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00172 K04683 - gmx:100797603 570.466