Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00168 ATGTTGTCAGTAGCACCTTCTGTTGAAGCCAAACAGAGCCCAGAAGTGCCTAAAACTGCTGCTACTACTAACAACCAAAACCAACCTAGCGTTTCTCCCCAAACTAGCCACATATTCAAATCAAAATTACCAGATATACCAATCTCCAACCACCTCCCTCTCCACACCTACTGTTTCGAGAAACTCTCTGAATTCGCCGATCGTCCATGTCTCATCGTCGGTTCCGCCGGAAAAACCTACACCTACGCCGAGACTCACCTCTTGTCTCGAAGGATCGCCGCCGGTTTCTCTAAACTCGGCATAAAAAAAGGCGACGTCATCATGATTCTCCTCCAAAACTCCGCTGAGTTCGTCTTATCCTTCTTCGCAGCCTCCATGATCGGCGCCGTCGCCACCACCGCTAATCCGTTCTACACCTCCGCTGAGATCTTCAAGCAACTCACCGCTTCCAAAGCCAAGCTAATCATCACGCAGGCAATGTACGTGGATAAGCTCCGGCAGCAAGAGGACGATGCTCATCCGAAGCTAGGGGAAGACTTCAAGGTGGTCACCGTCGACGAACCGCCGGAGAATTGCTTACATTTCTCGGTGATTTCAGAGGGAAAAGAGGAGGAAGTGCCGGAGGTGGAGATAAACCCTAACGACGCGGTGGCGCTGCCGTTCTCTTCAGGAACGACGGGGTTACCGAAGGGAGTGATTCTGACGCACAAGAGCTTAACGACGAGCGTGGCTCAACAGGTGGATGGGGAGAATCCGAACCTGTATTTGAGTAGCGAAGATGTTCTGCTCTGCGTGCTTCCCCTGTTTCATATATTCTCGCTCAACAGTGTGCTATTGTGCGCTCTGAGAGCAGGGAGTGCTGTTTTATTGATGCATAAGTTCGAGATAGGGACATTGCTGGAGCTCATACAGAAACACAAGGTGACGGTGGCGATGGTGGTGCCACCGCTGGTGCTGGCGCTGGCAAAGAATCCGACGGTGGCGGAGTTTGACCTCAGCTCTATACGGTTGGTGTTGTCAGGGGCTGCGCCGCTTGGGAAGGAGTTGGAGGAGGCTCTCCGGAGTAGGGTGCCCCAGGCTGTTTTGGGACAGGGGTACGGGATGACGGAGGCAGGGCCGGTGCTGTCCATGTGTTTGGGGTTTGCAAAGCAGCCGTTCCCAGCAAAGTCAGGATCATGTGGCACTGTTGTAAGAAATGCTGAGCTTAAGGTTGTTGACCCTGAAACTGGTCTTTCTCTTGGCTACAATCAACCTGGTGAAATCTGCATCCGAGGGCAACAGATCATGAAAGGATATTTGAACGATGAGAAGGCCACAGCAACAACCATCGATGCGGAGGGTTGGCTTCATACCGGTGATGTTGGATACATAGATGATGATGATGAGATTTTCATCGTTGACAGGGTCAAGGAACTCATCAAATTCAAAGGCTTCCAAGTACGCATGCGTTCTTTAATTTATTTATGTGTTCATTTAAATTAA 1482 0.5081 MLSVAPSVEAKQSPEVPKTAATTNNQNQPSVSPQTSHIFKSKLPDIPISNHLPLHTYCFEKLSEFADRPCLIVGSAGKTYTYAETHLLSRRIAAGFSKLGIKKGDVIMILLQNSAEFVLSFFAASMIGAVATTANPFYTSAEIFKQLTASKAKLIITQAMYVDKLRQQEDDAHPKLGEDFKVVTVDEPPENCLHFSVISEGKEEEVPEVEINPNDAVALPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLSSEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMHKFEIGTLLELIQKHKVTVAMVVPPLVLALAKNPTVAEFDLSSIRLVLSGAAPLGKELEEALRSRVPQAVLGQGYGMTEAGPVLSMCLGFAKQPFPAKSGSCGTVVRNAELKVVDPETGLSLGYNQPGEICIRGQQIMKGYLNDEKATATTIDAEGWLHTGDVGYIDDDDEIFIVDRVKELIKFKGFQVRMRSLIYLCVHLN. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00168 493 FunFam Long-chain-fatty-acid--CoA ligase FadD 40 470 - -
Seca10g00168 493 ProSitePatterns Putative AMP-binding domain signature. 219 230 IPR020845 -
Seca10g00168 493 MobiDBLite consensus disorder prediction 1 36 - -
Seca10g00168 493 MobiDBLite consensus disorder prediction 16 36 - -
Seca10g00168 493 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 35 481 - -
Seca10g00168 493 Gene3D - 30 469 IPR042099 -
Seca10g00168 493 SUPERFAMILY Acetyl-CoA synthetase-like 48 480 - -
Seca10g00168 493 Pfam AMP-binding enzyme 62 475 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00168 Seca-Chr10 1583928 1588572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00168 32 492 Monolignol Biosynthesis Gene Families AT1G65060 72.281 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00168 K01904 - gmx:547492 780.785