LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g00147	ATGATTCAAAACACTGATATGAGGCTTGAATCGGGGACTTGTAACGTGTGCTCAGCTCCTTGTTCATCTTGCATGCATCTTAACCATGCTCTCATGGGGTCAAAGGCTGAAGAGTTTTCTGATGAAAACTGTCGCTCAGGGGAGGCTAATAATCAGTATTCTGTGAATGAGGGTAATGTATATTCTCTTAGGAGCAGAGCTTGTGAAAGCTTGCAGCATGCTGTCAGTGAAACCAGTAATATGCTCAGTGTTAATTCAAGTCATGATTCTCTATCTGAAAATGCCGAGAGTAGACAGATGTTGTCAAATAAATATCAGGATTCCAAGCTTTTAGAAGGCCATGATGACAATACATCTTGTATTAGTAGAGCCTGTGATTCTAATTTAGTAAATGATAGCCATCAAAGGAACGTGGACAGAATAAATATATCTTGTAGTTCAGCTTCAGTTAGTCATTTAGGGGTGGAAGGATCTGAAAGTGCTCCATCTGTTGACATGTCTGGCTTGGAGATTCCATCTTCTAAAGATGCAGACTCTGGCCATAGCTCACCTAAGGTACAAAGGCTGTATGGACAATCTCGAAGTAGTAAATCTTTCTCAGGAAATCCAAGCATAATACATGAGGAAAAGGATTCCTGTTCTCATATCCCAGAAAAGTTGTCAGAATGCTTTACTGAGAATTCCAGTTCATCATTAACCAAAGAGAGGGCACCTATTGTTGTTTCTGGTGAGAAGTCTATTGCCAATAAGGATATCCTTATTAGCAATACTGCCAAGGTTTCACCAAAAATATGTCCAAAGTCAGAGGTAGATACTGATAATGATGTCTGTGCTGCTAATGAAGAAGATCATAAATGTTCAGTCCATGATGGGCAGCATGAGAAATCTGAAGAGCTGGTTAAATCACCTGGAAACCAGGCACCTCAATCTGAAGATGAGAGTGAGGAGTCAGATGTTGTGGAACACGATGTAAAGGTGTGTGACATCTGTGGAGATGCTGGCCGTGACGATCTACTTGCTATATGTTGTAGGTGCAGTGATGGTGCAGAGCACACCTACTGCATGCGAGAAATGCTTCAGAAAGTCCCTGAAGGGGATTGGTTATGTGAAGAATGCAAAGATGCAGAGGAGACTGAAAATAAGAGGCTGGATGTTGAAAAAAAATCCAATAAAATTAGTTCAACTTCACAAGTTTCTGGCAAGAGACTTTCTGATAACGTCGAAGTAGCTCCTCCATCAGCAAAAAGGCAAGCTCTTGAATTAAGCACAGCATCACCAAAGGCATTGAGCCCCAAGAGATTAGTTCCACTGTCACGAGAATCTTCATTTAAGAGCTTAGATAAGTTGAAAGCGAAGCCTGGTCTTGTGGTGCCTATTCGTAACCACTCTGGTGGTGATGATGCAGAGATTGCCCGTTCTCCTTCTATTGGACCCCGGGGTCAAATTTCAAAAAGTATATTGTTGAAGTCTAATTCTTCCAACAACTTAAATTCCAAACCAAGAGTCAAACTTGTTGATGAAGTCGTTCCCCCAAAACTAAAAGGGGGTAATGAACATACTTCCAAGAATGTGGAGACACCTGCTCGGATGATGAACAAATCAACATTATTCAAATCCTCAAGTTTGGGTCGATCCAGTGCAACCGAATCAAAAGTTAAAATGCTTTCACCCAAGTCTACAACTTCTCAGGAATTGAAAGGATCTAGACATTTAAAAGAATCAGGTGCATTAGACAGGAAATTTCTGTCCAGGATTGATCGGCCTGTGGCTAGTTCTGTTGTTTCCACACCTAAGGGTGATCAGAAGCTTACACCTCGTGGTGAAACCACTAAACCTTCAGCAGTTAACAACAATCGAGAGTTGAAGGTTAACCAGGATGGAAAGTCAAGTGCATTATTAAAGTCAATGGGTAATATAAGCCGTAAAAGTTTGGAGCCTCAAGTTAGTTCAGAAAGAACATCAGCCAGTATTAATGAGGCGCTACAGGATGTGCTGCCTCGTTCACGAGAAACAGTAAATCAGGTTGAGAAATCCAGAGATAGTTCTGGTGATCGTGTAAAGTCTGTTGTTCCTGCTGCTTCAAAAGGCCCATTCTGTCAAAAATGTAAGCAATTTGGCCATTCTATGGAATGTTGCACAGCTGGTACTACACAAGAATCTGGTGCTGAAATATCTGTTGCTGCCTCAAGTAGTTCAAAAGAGGAAATGCATAAAGGCAATAAATTGAAAGCTGCAATCCAGGCTGCTTTACTTAAAAGGCCTGAAATTTACAAGAAGAAAGAAGTACCTAATCAAGCTGATGAAGTTTCTACATCGGGAACAGAATTGAATTGTGAAGTGACTTCACAAGACCCAATGTTGGTTTCTAGCATGCTGAAGAATAGTATATCTGCTGAAGAAACCCATGGACAACAGGAAATCCTTGAGAATTCTACATTTGGTTCTTCCAAATGTTCGTCTGCCAATGATTTGAAGCAATGTAACTCTTGTCCAACTGATTTTTGTTCCCAACCAGAAAAGTCAGATTCAATTGGTCTTACTGCTGGAAAGCCTTCAGTGAGAGACTTTTCGGATAAAGCTGTGGCAGTCTCAAGTGTTCTTCCGAAGATGTTGGCCTTTCCTGAATATGAATACATCTGGCAGGGTGTCTTTGAAGTGCATAGAAATGGAAAGCCTCCAGACTTATGTCAAGGAGTTCAGGCACATTTATCCTCTTGTGCTTCTCCAAAGGTTCTTGAGGTAGTGAGCAAGTTGGTGCCCAAAGTTCCCCTCAATGAAGTTTCTCGCTTGAGCACATGGCCTCTGCAATTTCATCATGGTGGTGCTAGAGAATATGATATTGCTCTTTACTTCTTTGCCAGAGATGTTGATAGTTATGAGAGACACTACAAGGGTCTATTGGATCACATGATTAGAAATGATTTAGCACTTCAAGGAATTATTGATGGTGTTGAACTTCTCATATACCCATCCAATCAGCTTCCTGAAAATTCACAGCGCTGGAATATGTTGTTTTTCTTATGGGGCGTGTTTAGGGGGAGGAGGATCAGTCATTCATATTCTACAAAAAAGATTTGTATTCCCAGTTTGAATGCAATACCAATTGAGGAGAATTCTTCAACTGCTGCTGTGACTTTGTCTGAAACGCACTGTTTGCCAAAGTGCATGGATGAAGAATCAATTAATTGTGATAAAGCATGCAATGCACTTCTCCCATCCACTTCCATAGACCAATGCCAGATTACTCTTAGTAGGAATATTGATATCAATCACCAGACGCATTTCAGTTCACAAGTAAGCTTAGAGAAGCTAGATAGTAGAATTGACACCAAATCTACATCAAGGGTTCCAAGAAGCAATACTCTTTTATGTCAAGAAATGAAATCCACTTGTCCGTCGCTGAAAGCTGGTGTACTAGAACGTGGGCAGTGCAGAGAGTCTAAACCTCCTAAAGCAATGGGAGCAAGTGTGAGCAGTAGGATTATGGAAGCAAAAACTGATTCTGATATTTCTGTCAAGCAAGAGAACACCCTGTCTCCGGCAATTCCTTCTGTTGGCAATCAAGAAAGAGGTGCTGCAAGCAACATTAATAAGGATGAAATTTCAGAGAGAGTGAACATTGATGAAGATCAGCTAAAGCTTAAGAGGAAACAGAAAGAAGGTTGTCACTATATTGATTTGGAAGAAACTATTGACAATCAAGAAACAGGTGCTGCAGGCAATGCTGGTAAGGATGAAATTTTAGAAAGAAGGAACAGTGATGCAAATCAGCAAAGGCCTAAGAGGGAACAGAAAAATAGTCACTATATTGACTTGGAGGCAACTGTTGAAAATCAAGAAACAGGTGCTGCAAGCAATACTAGTAAGGATAAAATTTCAGAGAAAATGGATAGTGATGAAGATCAGCGACGGCTTAAGAGGAAACTGAAAGAAGATGATCACTATATTGACCTGGAGGCAACTTTTCAGGAAGACCTGTCTGTAGAAGGAAGCAAGTGCCAACTACCCGATGATAAAGAAGTTCATCATGTGGATCTTTCTGCTGCTGTTATGCAGGCTTCACCAGTTAGTTGTCAGAAAAAGCATTGGAATGAGGTAAATGGCAAATTAGAAGATGGAGAAAATTCTAGCAAGAAGCTGAAGACGGATTTTGGTGGGATTTATGGATGTTACAGTTCTGGTGGTAGAGACTCTTTTAATGACAGTTTTACATCTCTGGGAAATGATATTGGTTCCTGTTCTTCAGTTGAGGACAAAAGATGTGAAGAAGCCTGTAATGAGAAAATAATCTGTGAGGACTTGGGAACGATGGAAAGAACCTTCTTTCCTGTTGATACACAGAATACCAATGAGTCACAGTTGGGGTTGAATGGGATGTCATTTAAAGGGCTTCATGAGTACCAAGACCAATTTCAAGATGGGATTCCGAGTCTTGAGCTTGCTTTAGGGGGTGAAACAAAACCACCACTTCTGCCATCGCCTGCCCCCAAGGGTATGCTGCCTTTCCTAGTTGGGGAAGTAGACAGGAAAAATAACTGTCCAGATAGCTTGGCAGATGGGCAGGAGGATGATGGTGTTGCTGCATCTCTTTCCCTTTCCCTATCGTTTCCATCTTCAAACAAGGAACACACAAAAGCTGCTTCAAAAGCAGAGCATTTGCCTGATGGGCACCGTGTGAATACCCCGTTTCTCCTTTTTGGGAGATTCACAGACAAATAA	4719	0.4115	MIQNTDMRLESGTCNVCSAPCSSCMHLNHALMGSKAEEFSDENCRSGEANNQYSVNEGNVYSLRSRACESLQHAVSETSNMLSVNSSHDSLSENAESRQMLSNKYQDSKLLEGHDDNTSCISRACDSNLVNDSHQRNVDRINISCSSASVSHLGVEGSESAPSVDMSGLEIPSSKDADSGHSSPKVQRLYGQSRSSKSFSGNPSIIHEEKDSCSHIPEKLSECFTENSSSSLTKERAPIVVSGEKSIANKDILISNTAKVSPKICPKSEVDTDNDVCAANEEDHKCSVHDGQHEKSEELVKSPGNQAPQSEDESEESDVVEHDVKVCDICGDAGRDDLLAICCRCSDGAEHTYCMREMLQKVPEGDWLCEECKDAEETENKRLDVEKKSNKISSTSQVSGKRLSDNVEVAPPSAKRQALELSTASPKALSPKRLVPLSRESSFKSLDKLKAKPGLVVPIRNHSGGDDAEIARSPSIGPRGQISKSILLKSNSSNNLNSKPRVKLVDEVVPPKLKGGNEHTSKNVETPARMMNKSTLFKSSSLGRSSATESKVKMLSPKSTTSQELKGSRHLKESGALDRKFLSRIDRPVASSVVSTPKGDQKLTPRGETTKPSAVNNNRELKVNQDGKSSALLKSMGNISRKSLEPQVSSERTSASINEALQDVLPRSRETVNQVEKSRDSSGDRVKSVVPAASKGPFCQKCKQFGHSMECCTAGTTQESGAEISVAASSSSKEEMHKGNKLKAAIQAALLKRPEIYKKKEVPNQADEVSTSGTELNCEVTSQDPMLVSSMLKNSISAEETHGQQEILENSTFGSSKCSSANDLKQCNSCPTDFCSQPEKSDSIGLTAGKPSVRDFSDKAVAVSSVLPKMLAFPEYEYIWQGVFEVHRNGKPPDLCQGVQAHLSSCASPKVLEVVSKLVPKVPLNEVSRLSTWPLQFHHGGAREYDIALYFFARDVDSYERHYKGLLDHMIRNDLALQGIIDGVELLIYPSNQLPENSQRWNMLFFLWGVFRGRRISHSYSTKKICIPSLNAIPIEENSSTAAVTLSETHCLPKCMDEESINCDKACNALLPSTSIDQCQITLSRNIDINHQTHFSSQVSLEKLDSRIDTKSTSRVPRSNTLLCQEMKSTCPSLKAGVLERGQCRESKPPKAMGASVSSRIMEAKTDSDISVKQENTLSPAIPSVGNQERGAASNINKDEISERVNIDEDQLKLKRKQKEGCHYIDLEETIDNQETGAAGNAGKDEILERRNSDANQQRPKREQKNSHYIDLEATVENQETGAASNTSKDKISEKMDSDEDQRRLKRKLKEDDHYIDLEATFQEDLSVEGSKCQLPDDKEVHHVDLSAAVMQASPVSCQKKHWNEVNGKLEDGENSSKKLKTDFGGIYGCYSSGGRDSFNDSFTSLGNDIGSCSSVEDKRCEEACNEKIICEDLGTMERTFFPVDTQNTNESQLGLNGMSFKGLHEYQDQFQDGIPSLELALGGETKPPLLPSPAPKGMLPFLVGEVDRKNNCPDSLADGQEDDGVAASLSLSLSFPSSNKEHTKAASKAEHLPDGHRVNTPFLLFGRFTDK.	1573

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g00147	1572	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	309	400	IPR013083	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	1250	1270	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	81	100	-	-
	Seca10g00147	1572	PANTHER	-	324	1038	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	594	614	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	1271	1289	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	154	207	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	287	319	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	670	684	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	520	564	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	592	614	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	1290	1304	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	639	688	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	176	207	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	511	572	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	1250	1304	-	-
	Seca10g00147	1572	SUPERFAMILY	FYVE/PHD zinc finger	314	375	IPR011011	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	379	433	-	-
	Seca10g00147	1572	MobiDBLite	consensus disorder prediction	639	669	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g00147	Seca-Chr10	1391142	1401068	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g00147	323	387	C2H2 Transcription Factor Family	AT3G01460	35.385	4.24e-06	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g00147	-		-	gmx:100806639	2024.98