Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00145 ATGAATGTGAATAGTAATAGTAACAGTGAGAGAGGGATGATGAGTAAGTGGCCATTCACAGTGTCTCAGTGGCAGGAACTGGAGCACCAAGCTTTGATTTACAAGTACATGGTGGCTGGTGTTCCTGTGCCTCCTCATCTTGTCATTCCCATTCAGCAGAACACCTTCCTACAGTACCCTCCCCCTACTGACTTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCAGAGCCAGGACGATGCAGGAGGACTGATGGGAAAAAGTGGAGGTGCTCCAAGGAAGCACATCCAGACTCCAAGTACTGTGAACGACACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACACAAACTATGACACAGTCATCATCCACTGTGACATCACTGACTGTAACTGGTGCCAGCAGAGGAACTGGAAATCTCCAGAACCCTACCACAAATGCCTTTGGTTATCCCCAAGGTACTGGTTCTGGTTCTGGTTCTGGATCTGACCAAACCCAATATCATCTGGATTCCATTCCCTATGGGATCCCAAGTAAAGAATACAGGTATTTTCAAGGACCTAAATCTGAGGGTGGTGAACATAGCTTCTTTTCCAAAACTTTAGGAAGCAACAAGGTTCTCCGGATGGAGTCACAGCTAGAAAACACTTTGATGCCAACTGGAGTTACCTCATTCTCTACATTGAGATCAAATAATAATTCCACGTTGCAGGGTGATTGTCTACAACCTTCTCTTTTATCTAGTGAATATGCTTCTGAAGAAACTGTGAGGCATGAGGGGCAGTTTCTTCGACCTTTCTTTGATGAATGGCCTAAAAGCAATGAGTCATGGTCTGGTCTGGAAGATGAGAGATCCAAGCAGACAGCTTTCTCCACAACTCAACTCTCAATATCCATTCCTTTGCCATCATCAAACTTCTCTACAACCAGTTCTCAATCCTCACATGATATGCTTGCTTCAAAAAGATCCTGTTTTCTTGTATTTTTAATAGAATCCTTCAACATTCTTCGTTTTGCATCTAATATTGATTCAGGTCTTTGGCCACATGCGCACGTGAATACCACAAACATGGAGATCTCAGTACTGGATCAGAAGCAGAAGCAGAAGCAACTCCTTAATTCCCTTTCCCACTGGAAGCATACCCTTCTGCAAAGTTTAAAGATGAAGTTTGTCTCTCTGGAACGAAAATTACATCATCTTTTTCGTTATTCATGCGGTAAGGCAACTTCTCTTGTACGGTTCAGTCAAGCCCAGATAGTGTACCTGTATTGGTTCCTAGTCTCCCATGTGCACCCATTTTTTATTCACCTCTGTTATTTCATAATCATGTCCCTGTTAGGTTATCTGGCTTTGAAGTTCTCAAAGCCAAGAACTTTCCCTGTTTACCCCAATGACTTTGACTTGTTCTTCACCTCTGTCTCGGCTTCCACACTTTCTGGCCTTTCTGTAGTGGAAATGGAGGTTCTCTCCAATAACCAACTCATCATTATTATCATTCTCATGTTACTTGGTGGGGAGGTTTTCACTTCCATGCTTGGACTTGTGTTTGCTTGGTTCAACTTCCCCAAGCAGCATCAAAGTAACCCAAATTCTACAACCTTTGAGACTCAAACTGAGCTGGATATAGTACATATCTCTGATTCTGAGTCACAGAACAAAAACTACCAAGTTGCTATTTTTCCAAATAGTAATGTGGACACTTTGAATCTGAATGTTAAGCACAACGCTATTAGGTATCTGGGGTATGTTGTTCTGAGTTACCTTACTATAGTTCTCTCTGTGGGTTGCATTCTGGTGTTCACATATTTCAGCGTTGTGCCCAGTGCAAAAGAAATTCTCAGAAACAAGGAACTGAATATACATACATTTTCAGTGTTTACAATAGTTACAACTTTTGCCAATTGTGGACTTCTCCCTACGAATGAGAACATGATGGTTCTGAAGAGGAACACAGGTCTTCTTCTGCTTCTCATTCCATTTGGCCTTGTGGGAAACACGTTGTACCCTCCATGCCTGCGGCTAGTAATCTGGGCATTGGGAAAATGTACCAAAAGAGAGGAATTTTTTTACATTTTGAAAAATGATAGAGAAATGGGTTATTATCCCATGCTTTCTGGTTTGCATTGCTGTCAGTTGGCTATTACTGTTTTTTTGTTGGTTGGCACACAGTTTCTGTTGTTCTGTTCTCTGGAGTTGAACTCAGAAAACTTGAAGGGTTTGCATTTCCATCAGAAATTGGTTGCCCTTTTGTTTCAAACTGTGAATTCAAGGCATGCAGGTGAATCAGTACTTGACCTTTCTACACTCTCTTCCGCCATGTTGGTGCTCGTCAATGTCATGATGTATATGCCGCCATACACGAGGTTTTTGGGCATAATAAGGGAAAGGGAGAGCGAAGAGAAGAAGAAGAGTAGCAATAGAAGAAGGAATTTAGCGGAGAGTGTTATGGTGTCACAGAGCTGTTATATGGCCATTTTTGTTATTCTGATATGCATCACTGAGAGAGACAAGTTAAGACGAGATCCCCTCAACTTCAATCTCTTGACCCTTACAACAGAACTCATCGGTGCATATGGGAATGTGGGGTTTTCCACTGGATATAGCTGTGAGAGGCAAATGGAAGCAGAGGATATTGATGGTCTCTGTAAGAAACATTGGAGCGGTTTGGCAGGGCGTTGCAGCAGCCAAGGGAAAGCGTTACTCATTCTCGTCATGTTTTTTGGCAAGCTTAAAAAATTCAGCGCCAATGGCGGCAAAGCATGGCTCCTATCTTAG 2796 0.427 MNVNSNSNSERGMMSKWPFTVSQWQELEHQALIYKYMVAGVPVPPHLVIPIQQNTFLQYPPPTDLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVESQTQTMTQSSSTVTSLTVTGASRGTGNLQNPTTNAFGYPQGTGSGSGSGSDQTQYHLDSIPYGIPSKEYRYFQGPKSEGGEHSFFSKTLGSNKVLRMESQLENTLMPTGVTSFSTLRSNNNSTLQGDCLQPSLLSSEYASEETVRHEGQFLRPFFDEWPKSNESWSGLEDERSKQTAFSTTQLSISIPLPSSNFSTTSSQSSHDMLASKRSCFLVFLIESFNILRFASNIDSGLWPHAHVNTTNMEISVLDQKQKQKQLLNSLSHWKHTLLQSLKMKFVSLERKLHHLFRYSCGKATSLVRFSQAQIVYLYWFLVSHVHPFFIHLCYFIIMSLLGYLALKFSKPRTFPVYPNDFDLFFTSVSASTLSGLSVVEMEVLSNNQLIIIIILMLLGGEVFTSMLGLVFAWFNFPKQHQSNPNSTTFETQTELDIVHISDSESQNKNYQVAIFPNSNVDTLNLNVKHNAIRYLGYVVLSYLTIVLSVGCILVFTYFSVVPSAKEILRNKELNIHTFSVFTIVTTFANCGLLPTNENMMVLKRNTGLLLLLIPFGLVGNTLYPPCLRLVIWALGKCTKREEFFYILKNDREMGYYPMLSGLHCCQLAITVFLLVGTQFLLFCSLELNSENLKGLHFHQKLVALLFQTVNSRHAGESVLDLSTLSSAMLVLVNVMMYMPPYTRFLGIIRERESEEKKKSSNRRRNLAESVMVSQSCYMAIFVILICITERDKLRRDPLNFNLLTLTTELIGAYGNVGFSTGYSCERQMEAEDIDGLCKKHWSGLAGRCSSQGKALLILVMFFGKLKKFSANGGKAWLLS. 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00145 931 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 417 931 - -
Seca10g00145 931 SMART QLQ_2 17 53 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca10g00145 931 Pfam Cation transport protein 579 880 IPR003445 GO:0006812|GO:0008324|GO:0055085
Seca10g00145 931 MobiDBLite consensus disorder prediction 108 173 - -
Seca10g00145 931 MobiDBLite consensus disorder prediction 117 173 - -
Seca10g00145 931 Pfam WRC 77 119 IPR014977 -
Seca10g00145 931 Pfam QLQ 18 52 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca10g00145 931 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Seca10g00145 931 ProSiteProfiles QLQ domain profile. 18 53 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00145 Seca-Chr10 1361829 1375044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00145 459 930 Inorganic Solute Cotransporters AT4G10310 46.154 1.46e-133 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca10g00145 TrkH 8.1e-24 CL0030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00145 K24976 - nnu:104601582 495.352