Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00136 ATGAGTACTGTTGGATACAGGTCAGATGAGGAATGCTCTGTCATAGGAGGAAAAGCTGAAATCGGGTTTCTAGATTTTGAGGAAGAAAAATCTGTTTGCAGTTATGTTGGTGATGAAGGGGCTCCAGTTATTGTATCTGTCCCATTTGCATTTGTAGATGGGAAGCCTCGATCAGTACTTGTTGGAGATACTGCTGTGGATTTAATAACCATTAATAATACTACTGATGAACCTGTGGACCTGTGGAGTGTCAATATTTTTGCCTCAAATCCTCAGGACTCTTTCACTCTTTCTCTCATGGAACCTCCATTAGCAAATTCAAATGCAGATACAGTTGACAGCTTTTTAGAATCTTTCTCTTTGGAGGACAGGATGCTGCAGCCTGGCGAGGTCTTAAGAATATGGTTGTCTTGCAAGACAAAAGAAATTGGCATGTACTCATCAGTTGTGTATTTTGATGTTGGAGATGAAAAAATAGAAAGAGTGGTTTTCCTCTTAGTTGAAGACAAGATCTCAAAATCTTTGGCTCCTAACAGACCTTATTCAAAAGGAAGGAGAAAAGACAAATTTGTTGTAGATAATTATGTTTCTGGCTCACGTCCAGCAGGGAAGACATATCGAAGATATGTAAATAGACTTCCAAGATATGACATTCCCCGGGACGTTAGACACCTGCTTGAGAGCAACCAAGTCCCTCAGATTATTGAAGAAGGTCTTACAAGAAAGAGTTATGCTTCTTATTTCAAAACATTAATAATAATGGAAGAGATACAATTGGAGGAAGACATGAGGACTTATGACATGGAATGCATAACCATGAGAAAGAGAGCCAATCAGTTTTTGTCCTTGGAGGTTCCTGGGCTTGCTGAGAGAAGGCCATCACTGGTTCATGGGGATTATATCTTTGCCAAGCGGGCATCTGAACATGATAAAAACACCACACCCGTTTATCAGGGATTTATCCACCGGGTTGAAGCTGATGAGGTCTATTTGAAATTTGATCCTGAATTTCACTTTTACCATAGAGATGAAAATCTCTATAATGTTCACTTCACGTATAATAGAATCAATATGAGAAGGTTATATCAAGCAATTGAGGCAGCAGAGAACTTAGGAACTGAGTTCCTTTTTCCATCTACATCATCCAGAAGGAGGTCCATTAAAACCACTGCTCTGGTTCCCATATCTGGTACTTATAATGAGCAGCAAGAGTGTTCAATCAAAATGATTTTGGGTTGCAAAGGCGCACCACCTTATGTGATTCATGGGCCTCCAGGTACGGGAAAGACTAGGACAATAGTAGAAGCAGTCCTCCAGCTGTACACACATCATAAGAATGCTCGTATTCTTATCTGTGCACCCTCAAATAGTGCAGCAGACCACATACTGGAGAAACTCCTTGTTCAACAGGATGTTGAATTTCATGAAAATGAAATATTCAGGCTCAATGCGTCTACCAGGCCATATGAGGATGTCAAACCTGAACTAATCCGTTTCTGCTTCTTTGATGAGTTGATATTTAAGTGTCCCCCACACAGTGCCCTCAATCATTATAGGATCATAGTATCCACATATATGAGTGCTTCTCTTCTTTATGCAGAAGATGTTGCCCGCGGTCACTTCTCTCACATTTTCTTGGATGAGGCTGGCCAAGCTTCAGAACCTGAAACCTTGATCCCTATATCCCATCTCTGCAGAAAGGAAACTGTTGTTGTTCTGGCTGGAGACCCATTGCAGTTGGGTCCAGTAATATATTCCAAGACAGCAGATGAGTTTGGATTGGGGATTTCATACATGGAACGATTGTTTGAATGTGAATTATATTCCAGTGGGGATGTCAATTATGTAACAAAATTGATTAGAAATTATCGATGTCACCCAGAGATTTTATATCTCCCTTCAAAGCTGTTCTATGACGGGGAATTAATGGCATGTAGAGATTCCACAACTTTCATGGTGACTCCAGAGTTCCTCCCTAACAAGGAGTTCCCTATTCTTTTCTTTGGCATCCAAGGATGTGATGAAAGAGAAGGGAATAACCCATCATGGTTCAACCGAATTGAAGCAAGTAAGGTTGTAGAAGTTGTCAGGAGACTGATAGCTGGTGGGAATATAAGAGAGCATGATATTGGCATAATAACACCATATAGGCAGCAAGTGTTGAAAATAAGACAGACACTTGAAAATCTAGATATGCCTGATATCAAAGTTGGTAGTGTTGAGCAATTTCAAGGACAAGAAAAGGAGGTTATTATCATATCAACTGTTCGATCAACCATCAAACACAATGAATTTGACAGAGTCTACTGTCTTGGTTTTTTGAGCAATTATAGAAGGTTTAATGTGGCTTTAACCCGTGCTATATCGTTGCTGGTTATAATTGGGAACCCCCATATTATCTGCAAGGATGATCACTGGAGCCAAATGTTGTGGTACTGTGTGGACAATTCATCTTATCAGGGTTCTTCTCTTCCGGAAAGGCTGGAACCTTGTGATGATGAGGACACTAGAGAGAACTCCTGCTTAGGCTTTAATGAAGATAATGTGTTAGCCTCTAACAATGGAGAATGGGATCAAGATTCATCCCAGACAGAGTTCCCTAAACCTGTGACCGATGAAGCTGAGTGGTCTGATGGCTGGAGAAGCAATTAA 2652 0.4054 MSTVGYRSDEECSVIGGKAEIGFLDFEEEKSVCSYVGDEGAPVIVSVPFAFVDGKPRSVLVGDTAVDLITINNTTDEPVDLWSVNIFASNPQDSFTLSLMEPPLANSNADTVDSFLESFSLEDRMLQPGEVLRIWLSCKTKEIGMYSSVVYFDVGDEKIERVVFLLVEDKISKSLAPNRPYSKGRRKDKFVVDNYVSGSRPAGKTYRRYVNRLPRYDIPRDVRHLLESNQVPQIIEEGLTRKSYASYFKTLIIMEEIQLEEDMRTYDMECITMRKRANQFLSLEVPGLAERRPSLVHGDYIFAKRASEHDKNTTPVYQGFIHRVEADEVYLKFDPEFHFYHRDENLYNVHFTYNRINMRRLYQAIEAAENLGTEFLFPSTSSRRRSIKTTALVPISGTYNEQQECSIKMILGCKGAPPYVIHGPPGTGKTRTIVEAVLQLYTHHKNARILICAPSNSAADHILEKLLVQQDVEFHENEIFRLNASTRPYEDVKPELIRFCFFDELIFKCPPHSALNHYRIIVSTYMSASLLYAEDVARGHFSHIFLDEAGQASEPETLIPISHLCRKETVVVLAGDPLQLGPVIYSKTADEFGLGISYMERLFECELYSSGDVNYVTKLIRNYRCHPEILYLPSKLFYDGELMACRDSTTFMVTPEFLPNKEFPILFFGIQGCDEREGNNPSWFNRIEASKVVEVVRRLIAGGNIREHDIGIITPYRQQVLKIRQTLENLDMPDIKVGSVEQFQGQEKEVIIISTVRSTIKHNEFDRVYCLGFLSNYRRFNVALTRAISLLVIIGNPHIICKDDHWSQMLWYCVDNSSYQGSSLPERLEPCDDEDTRENSCLGFNEDNVLASNNGEWDQDSSQTEFPKPVTDEAEWSDGWRSN. 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00136 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 807 IPR027417 -
Seca10g00136 883 Gene3D - 624 824 IPR027417 -
Seca10g00136 883 MobiDBLite consensus disorder prediction 852 883 - -
Seca10g00136 883 FunFam Probable RNA helicase SDE3 624 822 - -
Seca10g00136 883 Gene3D - 326 610 IPR027417 -
Seca10g00136 883 MobiDBLite consensus disorder prediction 852 868 - -
Seca10g00136 883 CDD DEXXQc_Helz-like 400 624 IPR026122 GO:0003723|GO:0032574
Seca10g00136 883 FunFam Probable RNA helicase SDE3 348 493 - -
Seca10g00136 883 CDD SF1_C_Upf1 625 813 IPR047187 -
Seca10g00136 883 Pfam AAA domain 513 587 IPR041677 GO:0004386
Seca10g00136 883 Pfam AAA domain 399 494 IPR041677 GO:0004386
Seca10g00136 883 Pfam AAA domain 596 797 IPR041679 -
Seca10g00136 883 PANTHER CANCER/TESTIS ANTIGEN 55 112 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00136 Seca-Chr10 1297964 1304752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00136 400 555 Core DNA Replication Machinery Family AT1G08840 27.673 4.22e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00136 K18422 - gmx:100801796 1502.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00136 10 1297964 1304752 Seca10g00136 10 1297964 1304752 ECH