Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00125 ATGGATTTGGAAGGTGAGGGCGTTAGGACACCAAAGATGGAACCAGAAGCAGAAGGAGCTCTGAATTCAAAGATGAAGGGTACTGGAAACCAAAGCAGTAAAGATATGATTTTCAGAGCTGATAAAATTGATCTCAAGAGTTTGGATGCCCAGCTTGAAAAGCACTTAAGCAGGGTCTGGTCAAGGAGCATTGAGCCAAAAAGGCCTAAAGAAGAGTGGGAGATTGAATTGGCGAAATTGGACTTGCGATATGTTGTAGCTCATGGGGCTTATGGTACTGTCTATAGGGGCACATATGATAACCAAGATGTTGCAGTGAAAGTGTTGGACTGGGGTGAGGATGGTGTTGCCACTGCTGCTGAAACTGCTGCTTTACGGGCATCTTTTAGGCAGGAGGTTGCTGTCTGGTACAAACTCGACCATCCAAATGTCACAAAATTTGTTGGAGCTTCAATGGGTACTTCAAATCTTAAGATTCCCTCAAAAAACCCTTCCAATGATCCTCAAGATTCCCTTCCTTCTAGGGCATGTTGTGTTATTGTTGAGTTTCTTCCTGGTGGAACACTCAAACAATACTTAATAAAAAATAGGCGGAGGAAACTGGCTTATAAGATTGTAATTCAACTGGCTTTGGATCTCTCTCGAGGTCTTAGCTATCTGCATTCGAAGAGGATTGTTCATCGAGATGTTAAAACAGAGAACATGTTGCTAGATTCTAATCGGAACCTGAAGATAGCTGATTTTGGAGTTGCTCGAGTTGAAGCTATGAATCCGAGTGACATGACTGGTGAAACTGGAACCCTTGGATATATGGCACCTGAGGTTCTGGATGGGAAGCCTTACAACAGGAGATGTGATGTCTATAGCTTTGGCATTTGCTTGTGGGAAATTTACTGCTGTGATATGCCTTATCCAGACCTAAGCTTTGCTGATGTGTCTTCTGCTGTTGTCCGCCAGAATTTACGACCAGAAATCCCAAGGTGTTGTCCAAGTGCCTTAGGAAATATCATGAGGAAATGCTGGGATGCAAATCCAAACAAGCGTCCAGAAATGGATGAGGTGGTGAGAATGCTAGAAGCAATTGATACTACCAAAGGTGGTGGAATGATACCTGAAGACCAGACTACAGGTTGCTTTTGTTTTGCCCCAACCCGTGGTCCATAA 1164 0.4364 MDLEGEGVRTPKMEPEAEGALNSKMKGTGNQSSKDMIFRADKIDLKSLDAQLEKHLSRVWSRSIEPKRPKEEWEIELAKLDLRYVVAHGAYGTVYRGTYDNQDVAVKVLDWGEDGVATAAETAALRASFRQEVAVWYKLDHPNVTKFVGASMGTSNLKIPSKNPSNDPQDSLPSRACCVIVEFLPGGTLKQYLIKNRRRKLAYKIVIQLALDLSRGLSYLHSKRIVHRDVKTENMLLDSNRNLKIADFGVARVEAMNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPEIPRCCPSALGNIMRKCWDANPNKRPEMDEVVRMLEAIDTTKGGGMIPEDQTTGCFCFAPTRGP. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00125 387 SMART serkin_6 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00125 387 SUPERFAMILY Protein kinase-like (PK-like) 60 358 IPR011009 -
Seca10g00125 387 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 58 361 - -
Seca10g00125 387 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Seca10g00125 387 MobiDBLite consensus disorder prediction 1 31 - -
Seca10g00125 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Seca10g00125 387 FunFam Serine/threonine-protein kinase HT1 184 369 - -
Seca10g00125 387 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00125 387 FunFam Kinase suppressor of Ras 1 69 163 - -
Seca10g00125 387 CDD STKc_MAP3K-like 86 358 - -
Seca10g00125 387 Gene3D Transferase(Phosphotransferase) domain 1 184 372 - -
Seca10g00125 387 Gene3D Phosphorylase Kinase; domain 1 69 161 - -
Seca10g00125 387 PRINTS Tyrosine kinase catalytic domain signature 219 237 IPR001245 GO:0004672|GO:0006468
Seca10g00125 387 PRINTS Tyrosine kinase catalytic domain signature 181 194 IPR001245 GO:0004672|GO:0006468
Seca10g00125 387 PRINTS Tyrosine kinase catalytic domain signature 329 351 IPR001245 GO:0004672|GO:0006468
Seca10g00125 387 PRINTS Tyrosine kinase catalytic domain signature 285 307 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00125 Seca-Chr10 1184183 1188169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00125 14 387 MAP Kinase Kinase Kinase AT3G22750 80.053 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca10g00125 PK_Tyr_Ser-Thr 4.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00125 - - gmx:100803917 728.783