Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00123 ATGTGGTTGATTACACGCACAGTTCTATATTTTTGTTTTCAATCTCGAATTTCGGTTGGTTTTTTGGCGTTTGGAGTTCGTAGATTGCTCTCTCACTCTCTCTCCCTTTTAATCCTGTTGCCAAGTGTTAGTGACAGTCCTTTCTGTGGATTAATTCCTTTTTGGAGCAAATCTAGGAAATCATCGTCTGAATTTCTCTCTCATGTTAGTAGTTTGTTTCATGCTTTTCTTTTGGGCTACACAGAGTTTATAGAAGATTCGCCTGTATTCAACTACATCAATAATTTATCACCTATAAAGCCCGTTAAGTCTGTTCATATTACTCAGACGTTCAATTCTCTTAGCTTTTCATCCCCTCCATCTGTTTTCACATCACCCCATGTCAGCTGTCTCAAAGAATCTAGATTCCTTCGGAGACACAACAACCCATTGGGCACACCAAAGCCTAAGGTTTCATCTGAAGATGTAAATAAAGTTTACTCAAGTGAAGAGGCTCTTGCAAATTCTACTCATGCACATCATAACTCAAATGAATTACAGGAAAGTACTGATCAAGGGACTTCAGTAGGAGATGCTTCAGTTGAGCTACCACAAACCTTACAATATAATTGTGGTAGCCCTGGCTATGATCCACCACTTTGTGGTGCTAAGGCTAACTCTCTTTTGGAATTGCCTGCTGAGGCAGCATCAGATGTTGCCTATGTTCAGGAAGGTTGTAAAACAAATTCAACTGAGCATGAAGTGCATCTTCAGGGAATATGTCAGATCGAGAAGGGTGAAGGCCCGAATTGTGATTGGGATAGTTTAATTCCCAGTGCTACTGATCTGTTGATTTTCAATTCTCCAAATGGAGCAGAAGCTTTAAAGGGTCTCATGCAGAAACCATTGGGCTCTTCTGTACGACTTAGCGATTTTGTGTCTCTGCTTCCACAATCTTCCATCAATAGTGGTCAGAAAATACACATGGTTGATTCAGTTGTTTCTGGTTCTGAACATGAAACTGAAGATCACTGTACTGAGCCAATAGCAGCCACAGACACTGACCCCACACAGGACAATCTTGCCAATGTTGCTTTGATGACTAGCAATCCAAATGAGAAGGTGGATGATAAGCTTGTTTCTATCACGCACCGTGGTATAAGGAGGCGCTGCCTTGACTTTGAGATGGCCAGTGTGCGAAGGAAGAACTCAGATGATAATTCAAACACTGGCTCCAGTACACCACAGCCTGAAGTAAGGAATGCTGCAAATGAAAAGCAACTGCTTCCTGCAAAACGTAATGGAAATTCACAAAGGTGCATTTTACCGGGAATCGGTTTACACTTAAATGCACTTGCAACCTTAAAAGATCACAAAGGCATACAAAATGAAAAGTTGTCTTCTGGAATACAACTCAGTCTGCCCAGCTCTACTACTTCCTTGCAACTCTCCACAAGCCAAGAACATCAGCATCTAGCCTTGGTATCTGTATCATCTGAAAGAGAATTGGATCCATCAGAAAATGGTGTTCAGCCTGGTGAAGATTGTTCCCAGGCATCAGCTTACATGGCTGGTGAAGATTTCAATCCGAATAGCCCCAAAAAGAAAAGGCGTAAGTTGGAGCCAGCTGGAGAAACTGAGGGCTGCAAACGTTGTAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTATTCATGAAGATACCGTTCTTCAAACTCGCAAGCAGATTGAATCTCGTAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAATTCTGATTCTGCACCTGAAATTGGGGATGACCCAAATAAAACTCCAGCTTCAGCACGGCACAAAAGAGGATGCAACTGCAAGAAATCAAACTGCCTGAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGGTGCAAGAACGCATATGGTAGAAAGGATGGTTCTGCTCCTATAGGAATAGAAGCTGAGCCAGAAGAAGAAACAGAAGCAAGTGACAAGGGTGTGGCAGAAAAAGCTTTACAGAAAACGGAAATTCAGAATACTGAAGAACGTCCAGAATCTGCTGTTGTCTCAACACCATTACGGCTTTCCAGGCCATTGCTTCCATTGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTGCAACCATCTCTGGTTCTGGATTGTTTGCCAGCCAGAAGCTTGGGAAACCCAATTCTCTTTGGTCTCAAGCTAAGCATTTTCAACCTGTTCCAGATGATGAAATGCCTGATATTCTCCGTGGTGATAGCTCTCCTGTCGCTTGCATCAAAACTTCATCTCCAAATAGCAAGAGGATCTCCTCTCCTAACTGTGACTTGGGATCATCTCCTAGTCGCAGAGGAGGCAGAAAGTTGATATTACAATCTATTCCTTCATTTCCTTCTCTCACCCCTCATCCTTAG 2499 0.425 MWLITRTVLYFCFQSRISVGFLAFGVRRLLSHSLSLLILLPSVSDSPFCGLIPFWSKSRKSSSEFLSHVSSLFHAFLLGYTEFIEDSPVFNYINNLSPIKPVKSVHITQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHNNPLGTPKPKVSSEDVNKVYSSEEALANSTHAHHNSNELQESTDQGTSVGDASVELPQTLQYNCGSPGYDPPLCGAKANSLLELPAEAASDVAYVQEGCKTNSTEHEVHLQGICQIEKGEGPNCDWDSLIPSATDLLIFNSPNGAEALKGLMQKPLGSSVRLSDFVSLLPQSSINSGQKIHMVDSVVSGSEHETEDHCTEPIAATDTDPTQDNLANVALMTSNPNEKVDDKLVSITHRGIRRRCLDFEMASVRRKNSDDNSNTGSSTPQPEVRNAANEKQLLPAKRNGNSQRCILPGIGLHLNALATLKDHKGIQNEKLSSGIQLSLPSSTTSLQLSTSQEHQHLALVSVSSERELDPSENGVQPGEDCSQASAYMAGEDFNPNSPKKKRRKLEPAGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRNSDSAPEIGDDPNKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSISCRCEGCKNAYGRKDGSAPIGIEAEPEEETEASDKGVAEKALQKTEIQNTEERPESAVVSTPLRLSRPLLPLPFSSKGKPPRSFVATISGSGLFASQKLGKPNSLWSQAKHFQPVPDDEMPDILRGDSSPVACIKTSSPNSKRISSPNCDLGSSPSRRGGRKLILQSIPSFPSLTPHP. 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00123 832 MobiDBLite consensus disorder prediction 490 509 - -
Seca10g00123 832 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 81 831 IPR044522 GO:0003700
Seca10g00123 832 MobiDBLite consensus disorder prediction 494 508 - -
Seca10g00123 832 MobiDBLite consensus disorder prediction 396 414 - -
Seca10g00123 832 MobiDBLite consensus disorder prediction 392 414 - -
Seca10g00123 832 ProSiteProfiles CRC domain profile. 541 666 IPR005172 -
Seca10g00123 832 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 543 578 IPR005172 -
Seca10g00123 832 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 629 664 IPR005172 -
Seca10g00123 832 MobiDBLite consensus disorder prediction 785 807 - -
Seca10g00123 832 MobiDBLite consensus disorder prediction 166 190 - -
Seca10g00123 832 SMART CXC_2 626 667 IPR033467 -
Seca10g00123 832 SMART CXC_2 540 581 IPR033467 -
Seca10g00123 832 MobiDBLite consensus disorder prediction 767 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00123 Seca-Chr10 1152653 1158055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00123 84 831 CPP Transcription Factor Family AT4G14770 45.844 1.39e-166 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca10g00123 TCR 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00123 - - gmx:100804447 1191.41