Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00119 ATGACCTCTCTATCTCTTTGCCAAAAAACAGAACACCCTTACTTTATTTTTATTTTATCATTTTGGCTCTCCATCTTTGTTATTCTCATTTCCCTTAATCCCTCAAACCAATCTGAACCACCCCTTCCTCCCCCCAAACTGAATCCTAGATTATTGAAAGCTCACACGGCTCTTCAAGCATGGAAGCATTCAATTATCTATGACCCTAACAACATCACCTCCAATTGGTCTGGTATCCATGTTTGTAACTACACTGGCATCTACTGTGCACCAGCCCCAGATGAGCCTCACATCTTTACAGTGGCTGGAATAGACCTAAACCATGCCAACATAACTGGTTCATTACCGGATGAGCTTGGCCTCTTAACTGACCTAGCTCTTTTTCACATAAACTCCAATGACTTTTGCGGTTCTCTTCCTGATAGCTTTAGAAACCTTCACCTTCTCTATGAGCTAGATATCAGTGGTAACCGATTCTCAGGACCATTTCCTGAGGTTGTTCTTCACATTCCTTCATTGAAATACTTGGATATCAGATTCAATGAGTTCCAAGGCAACATTCCTTCAAGCCTCTTCGACCTTAAGCTCGATGCCCTTTTCATCAACAACAACAAATTCCAGTTCTCTTTGCCTGAAAACTTGGGGAATTCCTCTGTTTCAGTTGTTGTGTTAGCAAATAATGACATCAGAGGTGGTCTTCCATCACGTTTGGACAAAATGAAGGATACCCTTGATGAGATTATCATCATGAATAGTGGGCTAACGGGTTGTTTGACCCCAGAAATAGGATTTTTGGAGAAAGTCACAGTGTTTGATGTGAGCTTCAACAACTTGTTTGGAACATTGCCAGAAAGCATAGAAGGAATGAAGAGCTTGGAGCAGCTCAATGTGGCGCATAATAATTTTTCCGGCAGAATTCCTGAGAGTGTATGCACATTGCCCATGTTGGAGAATTTCACTTATTCATACAATTACTTCAACAGTGATTCACCAGAGTGTCTAAAGTTGCCACAAAAAGATGATCGGGAGAATTGTATACCTGATAGGCCATTACAGAGGTCACCAGAGGAATGTGAATCTATTTATGATCACCATGTTGTTTGTAGTGCCTCTGGCGGCTTCTATGCAAACTCATTGAATCCTAGATTATTGAAAGCTTACACGGCTCTTCAAGCATGGAAGCAGTCAATTATCTATGACCCCAACAACATCACCTTCAATTGGTCTGGTATCAATGTTTGTAACTACACTGGCATCTATTGTGCACCAGCCCCAGAAGAGCCTCACATCTTTACAGTGGCTGGAATAGACCTAAACCATGCCAACATAATTGGTTCATTACCATACGAGCTTGGCCTCTTAACTGACCTAGCCCTTTTTCATATAAACTCCAATGACTTTTGCGGTTCCCTTCCTACTAGCTTTAGAAACCTCCACCTTCTCAATGAGCTAGATATTAGTGGTAATCGATTCTCAGGACCATTTCCTGAGGTTGTTCTTGACATTCCTTCATTGAAATACTTGGATATCAGATTCAACGAGTTCCATGGAAACATTCCTTCGAGCCTTTTTGACCTTAAGCTCGATGCCCTTTTCATCAACAACAACAAATTCCAGTTCTTTTTGCCTGAAAACTTGGGGAATTCATCTGTTTCAGTTGTTGTGTTAGCAAATAATGACATCAGAGGTGGTCTTCCATCCTGTTTATACAAAATGAAGGACACCCTTAATGAGATTATCATTATGAATAGTGGGCTAATGGGATGTTTGACTCCAGAGATAGGATTTTTGGACAAAGTCACAGTGTTTGATGTGAGCTTCAACAACTTGTTTGGAGCATTGCCAGAAAGCATAAAAGGAATGAAGAGCTTGGAGCAGCTCAATGTGGCACATAACAACTTTTCTGTCAAAATTCCTGAGAGTATATGTACATTGTCCAAGTTGGAGAACTTCACTTATTCATACAATTACTTCAACAGTGAATCGTCAGAATGTATAAAGTTGCCACACAAAGATGTAAGAAAAAATTGTATACCCGATAGGCCATTACAAAGGTCACCAAAGGAATGTGAATCTATTTACAATCACCATTTGGTTTGTAGTGCCTTTGGTGGCTCCTGTGCAAACCCACCACCTCTTCTCGCAACAACTTATAACCAATATCCATGA 2169 0.4057 MTSLSLCQKTEHPYFIFILSFWLSIFVILISLNPSNQSEPPLPPPKLNPRLLKAHTALQAWKHSIIYDPNNITSNWSGIHVCNYTGIYCAPAPDEPHIFTVAGIDLNHANITGSLPDELGLLTDLALFHINSNDFCGSLPDSFRNLHLLYELDISGNRFSGPFPEVVLHIPSLKYLDIRFNEFQGNIPSSLFDLKLDALFINNNKFQFSLPENLGNSSVSVVVLANNDIRGGLPSRLDKMKDTLDEIIIMNSGLTGCLTPEIGFLEKVTVFDVSFNNLFGTLPESIEGMKSLEQLNVAHNNFSGRIPESVCTLPMLENFTYSYNYFNSDSPECLKLPQKDDRENCIPDRPLQRSPEECESIYDHHVVCSASGGFYANSLNPRLLKAYTALQAWKQSIIYDPNNITFNWSGINVCNYTGIYCAPAPEEPHIFTVAGIDLNHANIIGSLPYELGLLTDLALFHINSNDFCGSLPTSFRNLHLLNELDISGNRFSGPFPEVVLDIPSLKYLDIRFNEFHGNIPSSLFDLKLDALFINNNKFQFFLPENLGNSSVSVVVLANNDIRGGLPSCLYKMKDTLNEIIIMNSGLMGCLTPEIGFLDKVTVFDVSFNNLFGALPESIKGMKSLEQLNVAHNNFSVKIPESICTLSKLENFTYSYNYFNSESSECIKLPHKDVRKNCIPDRPLQRSPKECESIYNHHLVCSAFGGSCANPPPLLATTYNQYP. 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00119 722 Gene3D Ribonuclease Inhibitor 553 709 IPR032675 -
Seca10g00119 722 FunFam Leucine-rich repeat extensin-like protein 1 55 216 - -
Seca10g00119 722 Pfam Leucine rich repeat N-terminal domain 56 89 IPR013210 -
Seca10g00119 722 Pfam Leucine rich repeat N-terminal domain 388 421 IPR013210 -
Seca10g00119 722 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 31 371 - -
Seca10g00119 722 SUPERFAMILY L domain-like 55 336 - -
Seca10g00119 722 Gene3D Ribonuclease Inhibitor 217 346 IPR032675 -
Seca10g00119 722 Gene3D Ribonuclease Inhibitor 53 216 IPR032675 -
Seca10g00119 722 Gene3D Ribonuclease Inhibitor 385 552 IPR032675 -
Seca10g00119 722 FunFam Leucine-rich repeat extensin-like protein 1 387 548 - -
Seca10g00119 722 SUPERFAMILY L domain-like 386 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00119 Seca-Chr10 1125282 1131046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00119 380 704 Leucine-rich Repeat extension Gene Families AT3G22800 65.337 1.75e-146 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00119 - - csat:104708837 611.683