Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00110 ATGGATTTTGTGGGTTATGCATTCCTCATTGCCACCATTTGTGTTCTACTTTCATTCCTTGCAAGAACCAAAAAACCAAACTACAGGCTTCCACCAGGACCCTCCTCTCTTCCTATCATAGGAAACCTCCTTGAACTAGGCAACAAGCCCCACCAATCCTTGGCCAAGCTTGCTAAGATTCATGGCCCTGTCATGACCCTTAAGTTAGGCCAAATTACAACTATAGTGGTCTCTTCAGCTGAGATGGCTAAAGAGGTTCTGCTAACCCATGATCAGTTCTTGTCAAACAGAACCATTCCCCAATCTGTGTCAGTTCTTAACCATGAGAACTATAGCCTAGCCTTCATTCCTGTTTCCCCTCTTTGGAGAGACCTGAGGAAAATATGCAATGGTCAGTTATTTGCACACAAGACTCTTGATGCCAGCCAACATGTCAGACGTAACAAAGTGCAACAACTCCTCAATGAAATCCACCAAAGCAGCCAAACTGGTGAAGCAGTGGATATTGGAACAGCAGTTTTCAAGACTACCATAAATTTATTATCAAACACCATTTTCTCTGAGGATTTGATTCAGTCTGCTGGTACAGCAGGGGAGTTCAAGGACTTGGTGACAAATATCACAAAACTGGTTGGAACACCAAACTTGGCAGATTATTTTCCTATCTTGAAAATGGTTGATCCACAAGGCATAAAAAGACGACAAGCTAAGAATGTTGAAAAGGTGTTGGACATTTTCGACCGCTTGGTTAACCAAAGGTTGAAGTTAAGAGAAGGCACAATCACAAGTGTTGACAGCCACAAGGACATGTTAGATGCCCTTCTCAACATTTCTAAGGAGAACAAAATGATGGACAAAACAATGATTGAACATCTATCACATGACCTGTTTGTTGCTGGGACGGATACAACAACATCTACACTGGAATGGGCAATGACAGAGTTACTATGCAATCCAGAGGTTATGTCAAAGGCAATAGAAGAACTTGAGGTAACCATTGGCAGAGGTAACCCTGTTGAGGAATCAGACATTGTCAGACTCCCTTACTTGCAAGCTATAATCAAGGAAACATTCCGCTTGCATCCACCAGTTCCATTTTTACTGCCTCGAAAAGCTGAGAGTGATGTAGATATTTGTGGATACACAATCCCAAAGGATGCACAAGTTTTGGTGAATGTATGGACTATTGGCAGGGATTCGAGCATATGGGACAATCCGAATTTGTTTTATCCAGAGAGATTTTTAGTGTCAGACATTGATGTCAAAGGCAGGAACTTTGAGCTTGCACCCTTTGGTGCTGGGCGAAGAATATGCCCTGGCATGATGCTGGCTATTAGGATGTTGCTCTTAATGTTGGGTTCATTGATCAACTCCTTTGATTGGAAGCTTGAAGATGGTATGAGTTTAGAGGATATCGATATGGATGACAGGTTTGGGATCACCTTACAAAAGGCTCAACCCTTACGAGTTGTTCCTCTAAAAATAAACATTTAA 1494 0.4203 MDFVGYAFLIATICVLLSFLARTKKPNYRLPPGPSSLPIIGNLLELGNKPHQSLAKLAKIHGPVMTLKLGQITTIVVSSAEMAKEVLLTHDQFLSNRTIPQSVSVLNHENYSLAFIPVSPLWRDLRKICNGQLFAHKTLDASQHVRRNKVQQLLNEIHQSSQTGEAVDIGTAVFKTTINLLSNTIFSEDLIQSAGTAGEFKDLVTNITKLVGTPNLADYFPILKMVDPQGIKRRQAKNVEKVLDIFDRLVNQRLKLREGTITSVDSHKDMLDALLNISKENKMMDKTMIEHLSHDLFVAGTDTTTSTLEWAMTELLCNPEVMSKAIEELEVTIGRGNPVEESDIVRLPYLQAIIKETFRLHPPVPFLLPRKAESDVDICGYTIPKDAQVLVNVWTIGRDSSIWDNPNLFYPERFLVSDIDVKGRNFELAPFGAGRRICPGMMLAIRMLLLMLGSLINSFDWKLEDGMSLEDIDMDDRFGITLQKAQPLRVVPLKINI. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00110 497 Gene3D Cytochrome P450 20 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 SUPERFAMILY Cytochrome P450 31 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 FunFam Cytochrome P450 76C4 22 491 - -
Seca10g00110 497 Pfam Cytochrome P450 31 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 PRINTS P450 superfamily signature 438 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Seca10g00110 497 CDD CYP76-like 58 492 - -
Seca10g00110 497 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 11 494 - -
Seca10g00110 497 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 PRINTS E-class P450 group I signature 82 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g00110 497 PRINTS E-class P450 group I signature 351 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00110 Seca-Chr10 1053198 1054923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00110 8 494 Cytochrome P450 AT2G45550 46.761 2.16e-163 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00110 - - gmx:100805772 751.125