Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00107 ATGGAACCGGACATGAGATCAAGTGGCCCTTCTGGTTCTGGGGTTCTGGTAAAGAGCAGGAGCTCGTCAGGTTCTTTAATTGTCAGAAAAAAAGGGGATGGGTTGGGTTCTACAGCTACTGCCGCTGCTGGGGTTGGTTCTTCCACCTCTCGGAAGCTGTATGGATCCAAAAAAAGGCCCAACGTCAACATGTCCTTGAGTGATTCCGGATCAAGCGACGATTTTCCGATGCCTCCTGCTAGGAGGCTCCGTCCTGAGACTATTCGAGTCTGTAATGGTTTGACTGCCTCTGAGCGGGGTATGGTAGGGGGGAGTGAAATTAATAGGAAGAGGGATAGACTGGAACAAATTAGGGGTAATGGGGAAGGTATGATTGCGGAGAATGGCTTGGACAAGGGGGAAAGGAAGCGCAATAAGCTGGGTGTGTTTGATTTCAATGAATATGAAAGGATGGATGTGGAGAAGATGAGAAGGAGGCATTTTGATAATAATGGAGTTGGTTTAGTAGGAGGTAGGTTTATGGGATCAGTACATATGGCTAGAAGTGGCGTTGATGGGGAATTTGAAACCAGGTCAAGCAGGCATATTCTTGACAAGAGGAAGAACTTGTATAATGACAGGCCGAGCAGCTTGTATCCAGGGGATAATGTTGATCACGGTAGGCTCAAGATGAACAGGGATGGAGATCGGTTGCCTCTACCCTTGTCGAGGGAGAAATTTAATTCAGATAAACCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGGTGGGCCATTAGAACACTATGATCATTGCAAACCCGTGGACAGCAGGCAAAGGTTGAAGACCAAAGGGACTGCCAAGGGGAATGCTCTGATTCATCCTGCATCAAAACCTGTTGAGAAACCAGGATTACTTGTTAGGCCAGAGAAGAAGCAGATAGCATCCAGAAAATCATTGTCAAGTAAGGATAGTAGGCGGGATGAGTGCGAGTCAGATAACAGTGACACATCGTTGAATCCAGGAATGAGAAATGTTGAAGCTCACAAACCTGCTAAGAGGATAATCTCTGAGGATGAACAGACTCCTGTGCATGAAAAGTCCCCACCTACAACGTCGAAAGAAGGAAAACTCAAGCGTGGTAGTGGCACAGAAAAACAGAAACTGCGAGAAAGAATAAGGGAGATGCTCTTGAATGCAGGTTGGACCATAGACTACCGTCCTCGAAGGAATAGAGACTATCTGGATGCAGTTTACATTAATCCAGCAGGTACTGCCTATTGGTCTATCATCAAGGCATATGATGCACTTCAAAAGCAGTTGAATGATGATGTTAATGAGGCCAAGCCCAAAGGGGATAGTTCTTCCTTCGCTCCTATCGCAGATGAAGTGCTCAGTCAGTTGACAAGAAAAACTAAGAAGAAAATGGAGAAAGAATTAATGAAGAAAAAGAAGAAGAAAAAATATGATAGTGAAAGTGATAGTGGAAAAGAGCCTCACATAAGAAGATCTGCCAGCAACAAGCATGATATGAATAGCATGGATAGTGATAGCAATGAGGAGAAATTGAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGATTGAAAATACCAATGCTAGTGCTAGCTCTAAAAGCCAGAATGCTACCCATCACTCAAATGATGGAATGGAAAAATCATTCTCTGGATGTGATCCTCATATTCTACATGGACGCCAGAGTAAAAAACATGGAAGATGTACTTTGTTATATCGTAGTTCTAACAAGGGGTTAAATTCAGAGTCTGATGGCTTTGTCCCGTATACGGGCAAACGGACAGTGCTTTCCTGGTTGATTGACTCTGGGACAGTTGAGTTAAGCCAGAAGGTTCAATACCGCAGACGGAAGAAAGTACTGTTGGAGGGATGGATCACAAGACACGGTATTCATTGTGGCTGCTGTAGTAAGATCCTTACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTTCCACAGCCATATCAAAACATATTTTTGGAATCTGGAGTTTCTCTTTTACAGTGCCAGATAGATGCATGGAATAGACAAGAGAATTCTGGGAAAATTGGTTTCCATTCAGTTGATATTGATGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATATCATCAGAGCTGCTTGGATATACAGATGCTTCCTCCTGGTGAATGGCATTGTCCAAATTGTACCTGTAAATTTTGTGGAATAGCCAGTGGAACTTCTAAGAAAGAAGTTGATGCAACTACGAAGGTCTTATGTACTTGCAACTTATGTGAGAAAAAATATCATTCCTCTTGTGCTAAGGAGATGGATGCCTTTCCTAATGACTTCAATACATCAGACCTTTCTTTTTGTGGGGAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTTGGTACCAAAAATGAACTAGAAGCGGGCTTTTCATGGTCTCTTATTCACAGAACAAATGAAGACTCGGAGGCAGGTAGGGGAATTACCCAGAGGGTGGAATGTAATTCCAAGCTGGCTATTGCACTGACTGTGATGGATGAATGCTTTTTACCTGTTGTTGATCGGAGGAGTGGGATCAATATAATCCGTAATGTTTTATATAATAGTGGGTCAAACTTCAGTCGGTTGAATTATAGTGGATTTTACACTGCTATTTTAGAGAGAGGGGATGAAATCATTTCTGCAGCATCTATCAGGTTCCATGGAACTAAGTTGGCAGAGATGCCATTCATTGGGACTCGCAACATATACAGGCGCCAAGGGATGTGCCGCCGACTTTTTTCTGCCATTGAATCGGTCCTTTGCACTCTGAAGGTTGAAAAACTGGTTATTCCTGCAATTGCTGAACTCATGCATACATGGACAGCAGTTTTTGGCTTCACACATCTTGAGGAGTCACTCAGGCAAGAAATGAAGTCATTGAATTTATTGGTCTTCCCTGGCGTAGATATGTTACAGAAGCTATTTGTGGAGCAAGGAAAACATGAGGGCAGTGCAATTGCTGCAGGTTTGGAGAAACTGAAAAATGGGGATAATGTTTTTATTAAGACCAAATTGGCAAATAAGTCAGATATGGATTCCTCAACTCTGCAAGATTCTCATGGAAGTGATGATGCTAGTTCAAATCCTGCCAATGAGATGAATGATGAATGTAGTGATGCTTCTCAAGAACTTAACAACCAAGTTGCGGTTGACAGGACTATGTGTTCCAAATCTCGTTCGGAGGAAAGGTTATCTGATTCTGTTTCAGATAAATTTCCTTCCCCTAATAGGAGTGATGGTGCACCAGAAATGAAAAATAAAATAGCGATGGCTCCTGTTGATAAATTAAATCCTTGTTCTTCCATATGTCAGTCCGTTCCTCTGAATGGCTCTTCTATGAATTGTAATTCATCAGAGTTTGACATTAACCTAGTGTTGGATTCTCGAGTGGCCCACAATACTCTGCCTTCTGAAGAGGTTTACATGACTGATGCTCATGAGGTTCTTGAAGCTGTTCCTTCAGGGAATTTATCTGAAGAGAATATTACCAAGGAGAACAAGCAAAATGTAGATATCTCCGAATCTGTTCCTTCAGGGAATTTATCTGAAGAGAATATTACCAAGGAGAACAAGCAAAATGTAGATATCTCCGAATCTGTTCTCAATCATGCTGATGAGAGTTTGTTGCAAGATAGATCAGATTCCAATGGTGATATTGGATATGAGGGTGAGAAGAATTTACATTTGAACATAGGAGTTGCTTCAAATGAAATTTAA 3846 0.4184 MEPDMRSSGPSGSGVLVKSRSSSGSLIVRKKGDGLGSTATAAAGVGSSTSRKLYGSKKRPNVNMSLSDSGSSDDFPMPPARRLRPETIRVCNGLTASERGMVGGSEINRKRDRLEQIRGNGEGMIAENGLDKGERKRNKLGVFDFNEYERMDVEKMRRRHFDNNGVGLVGGRFMGSVHMARSGVDGEFETRSSRHILDKRKNLYNDRPSSLYPGDNVDHGRLKMNRDGDRLPLPLSREKFNSDKPIRVQGKNGVLKVMVNKKKVGGPLEHYDHCKPVDSRQRLKTKGTAKGNALIHPASKPVEKPGLLVRPEKKQIASRKSLSSKDSRRDECESDNSDTSLNPGMRNVEAHKPAKRIISEDEQTPVHEKSPPTTSKEGKLKRGSGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDVNEAKPKGDSSSFAPIADEVLSQLTRKTKKKMEKELMKKKKKKKYDSESDSGKEPHIRRSASNKHDMNSMDSDSNEEKLSSFIKQGSKSMKNKMIENTNASASSKSQNATHHSNDGMEKSFSGCDPHILHGRQSKKHGRCTLLYRSSNKGLNSESDGFVPYTGKRTVLSWLIDSGTVELSQKVQYRRRKKVLLEGWITRHGIHCGCCSKILTVSKFELHAGSKFPQPYQNIFLESGVSLLQCQIDAWNRQENSGKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTYHQSCLDIQMLPPGEWHCPNCTCKFCGIASGTSKKEVDATTKVLCTCNLCEKKYHSSCAKEMDAFPNDFNTSDLSFCGEECKELFEHLKKYLGTKNELEAGFSWSLIHRTNEDSEAGRGITQRVECNSKLAIALTVMDECFLPVVDRRSGINIIRNVLYNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRNIYRRQGMCRRLFSAIESVLCTLKVEKLVIPAIAELMHTWTAVFGFTHLEESLRQEMKSLNLLVFPGVDMLQKLFVEQGKHEGSAIAAGLEKLKNGDNVFIKTKLANKSDMDSSTLQDSHGSDDASSNPANEMNDECSDASQELNNQVAVDRTMCSKSRSEERLSDSVSDKFPSPNRSDGAPEMKNKIAMAPVDKLNPCSSICQSVPLNGSSMNCNSSEFDINLVLDSRVAHNTLPSEEVYMTDAHEVLEAVPSGNLSEENITKENKQNVDISESVPSGNLSEENITKENKQNVDISESVLNHADESLLQDRSDSNGDIGYEGEKNLHLNIGVASNEI. 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00107 1281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 707 782 IPR013083 -
Seca10g00107 1281 MobiDBLite consensus disorder prediction 41 72 - -
Seca10g00107 1281 MobiDBLite consensus disorder prediction 544 563 - -
Seca10g00107 1281 MobiDBLite consensus disorder prediction 1 81 - -
Seca10g00107 1281 MobiDBLite consensus disorder prediction 485 519 - -
Seca10g00107 1281 Pfam Tify domain binding domain 641 691 IPR032308 -
Seca10g00107 1281 MobiDBLite consensus disorder prediction 306 336 - -
Seca10g00107 1281 MobiDBLite consensus disorder prediction 1096 1127 - -
Seca10g00107 1281 Pfam PHD-finger 719 761 IPR019787 -
Seca10g00107 1281 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 908 992 IPR016181 -
Seca10g00107 1281 SMART PHD_3 760 819 IPR001965 -
Seca10g00107 1281 SMART PHD_3 718 759 IPR001965 -
Seca10g00107 1281 MobiDBLite consensus disorder prediction 1211 1236 - -
Seca10g00107 1281 MobiDBLite consensus disorder prediction 474 528 - -
Seca10g00107 1281 MobiDBLite consensus disorder prediction 1054 1083 - -
Seca10g00107 1281 SUPERFAMILY FYVE/PHD zinc finger 708 764 IPR011011 -
Seca10g00107 1281 PANTHER PHD FINGER PROTEIN 12 335 1118 IPR042163 GO:0003714|GO:0045892
Seca10g00107 1281 MobiDBLite consensus disorder prediction 12 26 - -
Seca10g00107 1281 ProSitePatterns Zinc finger PHD-type signature. 719 758 IPR019786 -
Seca10g00107 1281 MobiDBLite consensus disorder prediction 349 389 - -
Seca10g00107 1281 MobiDBLite consensus disorder prediction 279 389 - -
Seca10g00107 1281 CDD PHD2_CHD_II 719 758 - -
Seca10g00107 1281 ProSiteProfiles Zinc finger PHD-type profile. 716 761 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00107 Seca-Chr10 1040638 1048394 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00107 1 1046 PHD Transcription Factor Family AT4G14920 50.094 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca10g00107 TDBD 8.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00107 - - gmx:102666194 1749.95