Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00104 ATGGAACCGGGCATGAGATCAGGTGGCCCTTCTGGTTCTGGGGTTCTGCTAAAGAGCAGGAATTCGTCAGGTTGTTTAATTGTCAGGAAAAAAGGTGATGGGTTGGGTTCTACCGCTACTGCCACTGCTGGGGTTGGTTCTTCCACCTCTCGGAAGCTGTATGGATCCAATAAAAGGCCCAACGTCAACATGTCCTTGAGTGATTCCGGATCAAGCGACGATTTGCCGATGCCTCCTACTAGAAGGCTCGGCCCTGAGACTATTCGAGTCTGTAATGGTTTGAATGCCTTTGAGCGGGGTATAGTAGTAGGGAGTGAAATTAATAGGAAGAGGGATAGACTGGAACAAATTACGGGTAATGGGGAAGGTATGATTGCGGAGAATGGCTTGGACAAGAGGGAAAAGAAGCGCAATAAGCTGGGTGTGTTTGATTTCAATGAATATGAGAGGATGGATGTGGAGAAGATGAGAAGGAGGCATTTTGATAATAATGGAGTTGGTTTAGGAGGACGTAGGTTTATTGGATCAGTACATATGGCTAGAAGTGGCGTTGATAGTGAATTTGAAACTGGGTCAAGCAGGCACATTCTTGATAAGAGGAAGAACTTGTATTATGACAGACCGAGCAGCTTGCATCCAGGGGATAATGTTGATCATGGTAGGCTCAAGATGAACAGGGATGGAGATCGGTTGCCTCTACCCTTGTTGAGGGAGAAGTTTAATTCAGATAAACCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGGTGGGCCACTAGAACACTATGCTCATTGCAAACCCTTGGACAGCAGGCAAAGGTTGAAGACTGAAGGGACTGCCAAGGGGAAAGCTCTGATTCATCCTGCATTGCACTTAGAAGCAAAACCTGTTGAGAAACCAGGATTACTTGTTCGGCCAGAGAAGAAGCAGATAGCATCCAGAAAATCATTGTCAAGTAAGGATAGTAGGCGGGATGAGTGCGATTCAGATAACAGTGACACATCATTGAATCCAGGAAAGAGAAATGTTGAAGCTCACAAACCTGCTATTAGGATAATCTCTGAGGATGAACAGACTCCTGTGCATGAAAAGCTCCCATGTACTACATCAAAAGAAGGAAAAATCAAGCGTGGTAGTGGCACAGAAAAACAGAAACTGCGAGAAAGAATAAGGGAGATGCTCTTGAATGCAGGTTGGACCATAGACTACCGTCCTCGAAGGAATAGAGACTATCTGGATGCAGTTTACATTAATCCAGCAGGTACTGCCTATTGGTCTATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGAATGATGATGTTAAAGAGGCCAAGCCTAAAGCGGATAGTTCTTCCTTTGCTCCTATCGCAGATGAAGTGCTCAGTCAGTTGACAAGAAAAACTAAGAAGAAAATGGAGAAAGAATTAAAGAAGAAAAAGAAGAAAATATATGATAGTGAAAGTGATAGTGGAAAAGAGCCTCACGTTGGAAGATCTGCCAGCAACAAGCATGAAATGAATAGTGTGGATAGTGATAGCAATAAGGAGAAATTAAGCTCCTTTATAAAACAGGGAAGTAAGTCAATGAAAAATAAAATGATTGAAAATACCAATGCTATTGCTAGCTATAAAAGCCAGAATGCTACCCATCACTCAAATGATGGAATGGAAAAATCATTCTCTGGATATGATCCTCATATTCTACATGGACGCCAGAGTAGAAAACATGGAAGATGTACCTTGTTAGTTCGTAGTTCTAACAAGGGATTAAATTCAGAATCTGATGGCTTTGTCCCGTATACGGGCAAACGGACAGTGCTTTCCTGGTTGATTGACTTTGGGATAGTTGAGTTAAGCCAGAAGGTTCAATACCGTAGACGGAAGAAAGTACTGCTGGAGGGATGGATCACAAGAGTCGGTATTCATTGTGGCTGTTGTAGTAAGATCCTTACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTACCGCAGCCATATCAAAACATATTTTTGGAATCTGGAGTTTCTCTTTTACAGTGCCAGATAGATGCATGGAATAGACAAGAGAATTCTGGAAAAATTGGTTTCCATTCAGTTGATATTGACGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGATGCTTCCTCCTGGTGAATGGCATTGTCCAAATTGTACCTGTAAATTTTGCGGAATAGCCAGCGGAACTTCTAAAAAAGAAGTTGATGCAACTGTGTGTGTCCTACGTACTTGCAACTTATATCATTCCTCTTGTGCTAAGGAGATGGATGCCCTTCCTAATAACTTCAATACATCAGACCTTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTTCGAGCACTTGAAGAAGTACCTTGGTACCAAGCATGAACTAGAAGCAGGCTTTTCATTTTCTCTTATTCACAGAACAAATGAAGACTCAGAGGCAGCTAGTAGGGGAATTACCCAGAGGGTGGAATGTAATTCCAAGCTGGCTATTGCACTGACTGTGATGGATGAATGCTTTTTACCTGTTGTTGATCGGAGGAGTGGGATCAATATAATCCGTAATGTTTTATATAATAGTGGGTCAAACTTCAGTCGGTTGAATTATAGTGGATTTTACACTGCTATTTTAGAGAGAGGGGATGAAATCATTTCTGCAGCATCTTTCAGGTTCCATGGAACTAAGTTGGCAGAGATGCCATTCATTGGGACTCGCAACATATACAGGCGCCAAGGGATGTGTCGCCGGCTTTTTTCTGCCATTGAATCGGTCCTTTGCACTCTGAAGGTTGAAAAACTGGTTATTCCTGCAATTGCTGAACTCATGCATACATGGACAGCAGTTTTTGGCTTCACACATCTTGAGGAGTCACTCAGGCAAGAAATGAAGTCATTGAATTTGTTGGTCTTCCCTGGCATAGATATGTTACAGAAGCTGTTTGTGGAGCAAGGAAAACATGAGGGCAGTGCAATTGCTGCAGGTTTGGAGAAACTGAAAAATGGGGATAATGTTTTTATTAAAAACAAATTGGCAAATAGTTCAGGTATGGATTCCTCAACTCTGCAAGATTCTCATGGAAGTGATGATGCTAGTTCAAATCCTGCCAATGAGATGAATGATGAATGTAGTGATGCTTCTCAAGAGCTTAACAACCAAGTTGTGGTTGACAGAACTATGTGTTCCAAATCTCGGTCGGAGGAAAGGTTATCTGATTCTGTTTCAGATAAATTTTCTTCTCCGAATACGAGTAATGGTGCACCAGAAATGAAAAGTAGAATAGTGATGGCTCCTGTTGATAAATTAAATCCTTCGTCTTCCAAATGTCAATCTGTTCCTCTGAATGGCACTTCTGTGAGCTGTCACCCATTCGATGTTCAAGCTTTGGCTCAGGAAACTGCTTGTTCTGATCCATGTTCAGCAGAAAACCTTGGCAGGAAATGTCACTCCTTCACTGCTATGAAATGTAATTCATCAGAGTTTGACATTAACCTAGTGCTGGATTCTCGAGTGGCCCACAATACTCTGCCTTCTAAAGAGGTTTACATGACTGATGCTCATGAAGTTCTTGAAGCTGTTCCTTCAGGGAATTTATCTGAAGAGAATATTACCAAGGAGAACAAGCAAAATGTAGATATCTCCGATTCTGTTCTCAATCATGCTGATGAGCGTTTGTTGCAAGATAGATCAGATTCCAATGGTGAAATTGGATATCAGGGTGAGAAGAATTTACATTTGAACATAGGAGTTGCTTCAAATGAAATTAATTTTTATGAAAATGACGGAAATGCTTCCAGTGATAGTTCCAAGACTGATCTAACAGATTGA 3939 0.4148 MEPGMRSGGPSGSGVLLKSRNSSGCLIVRKKGDGLGSTATATAGVGSSTSRKLYGSNKRPNVNMSLSDSGSSDDLPMPPTRRLGPETIRVCNGLNAFERGIVVGSEINRKRDRLEQITGNGEGMIAENGLDKREKKRNKLGVFDFNEYERMDVEKMRRRHFDNNGVGLGGRRFIGSVHMARSGVDSEFETGSSRHILDKRKNLYYDRPSSLHPGDNVDHGRLKMNRDGDRLPLPLLREKFNSDKPIRVQGKNGVLKVMVNKKKVGGPLEHYAHCKPLDSRQRLKTEGTAKGKALIHPALHLEAKPVEKPGLLVRPEKKQIASRKSLSSKDSRRDECDSDNSDTSLNPGKRNVEAHKPAIRIISEDEQTPVHEKLPCTTSKEGKIKRGSGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDVKEAKPKADSSSFAPIADEVLSQLTRKTKKKMEKELKKKKKKIYDSESDSGKEPHVGRSASNKHEMNSVDSDSNKEKLSSFIKQGSKSMKNKMIENTNAIASYKSQNATHHSNDGMEKSFSGYDPHILHGRQSRKHGRCTLLVRSSNKGLNSESDGFVPYTGKRTVLSWLIDFGIVELSQKVQYRRRKKVLLEGWITRVGIHCGCCSKILTVSKFELHAGSKLPQPYQNIFLESGVSLLQCQIDAWNRQENSGKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGIASGTSKKEVDATVCVLRTCNLYHSSCAKEMDALPNNFNTSDLSFCGKECKELFEHLKKYLGTKHELEAGFSFSLIHRTNEDSEAASRGITQRVECNSKLAIALTVMDECFLPVVDRRSGINIIRNVLYNSGSNFSRLNYSGFYTAILERGDEIISAASFRFHGTKLAEMPFIGTRNIYRRQGMCRRLFSAIESVLCTLKVEKLVIPAIAELMHTWTAVFGFTHLEESLRQEMKSLNLLVFPGIDMLQKLFVEQGKHEGSAIAAGLEKLKNGDNVFIKNKLANSSGMDSSTLQDSHGSDDASSNPANEMNDECSDASQELNNQVVVDRTMCSKSRSEERLSDSVSDKFSSPNTSNGAPEMKSRIVMAPVDKLNPSSSKCQSVPLNGTSVSCHPFDVQALAQETACSDPCSAENLGRKCHSFTAMKCNSSEFDINLVLDSRVAHNTLPSKEVYMTDAHEVLEAVPSGNLSEENITKENKQNVDISDSVLNHADERLLQDRSDSNGEIGYQGEKNLHLNIGVASNEINFYENDGNASSDSSKTDLTD. 1313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00104 1312 CDD PHD2_CHD_II 722 761 - -
Seca10g00104 1312 MobiDBLite consensus disorder prediction 28 83 - -
Seca10g00104 1312 Pfam Tify domain binding domain 644 694 IPR032308 -
Seca10g00104 1312 ProSitePatterns Zinc finger PHD-type signature. 722 761 IPR019786 -
Seca10g00104 1312 MobiDBLite consensus disorder prediction 511 529 - -
Seca10g00104 1312 MobiDBLite consensus disorder prediction 1052 1086 - -
Seca10g00104 1312 SMART PHD_3 721 762 IPR001965 -
Seca10g00104 1312 MobiDBLite consensus disorder prediction 488 510 - -
Seca10g00104 1312 Pfam PHD-finger 722 764 IPR019787 -
Seca10g00104 1312 MobiDBLite consensus disorder prediction 315 355 - -
Seca10g00104 1312 MobiDBLite consensus disorder prediction 40 74 - -
Seca10g00104 1312 MobiDBLite consensus disorder prediction 315 340 - -
Seca10g00104 1312 MobiDBLite consensus disorder prediction 1098 1125 - -
Seca10g00104 1312 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 908 992 IPR016181 -
Seca10g00104 1312 Coils Coil 472 499 - -
Seca10g00104 1312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 711 800 IPR013083 -
Seca10g00104 1312 PANTHER PHD FINGER PROTEIN 12 344 1191 IPR042163 GO:0003714|GO:0045892
Seca10g00104 1312 ProSiteProfiles Zinc finger PHD-type profile. 719 764 IPR019787 -
Seca10g00104 1312 MobiDBLite consensus disorder prediction 478 529 - -
Seca10g00104 1312 SUPERFAMILY FYVE/PHD zinc finger 711 767 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00104 Seca-Chr10 1024832 1032827 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00104 1 1045 PHD Transcription Factor Family AT4G14920 49.482 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca10g00104 TDBD 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00104 - - gmx:100801863 1788.08