Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00099 ATGGAACCGGGCATGAGATCAGGTGGCCCTTCTGGTTCTGGGGTTCTGATAAAGAGCAGGAATTCGTCAGGTTGTTTAATTGTCAGGAAAAAAGGGGATGGGTTGTGTTCTACCGCTACTGCCACTGCTGGGGTTGGTTCTTCCACCTCTCGGAAGATGTATGGATCCAAGAAAAGGCCCAACGTCAACATGTCCTTGAGTGATTCCGGATCAAGCGACGAGTTGCCGATGCCTCCTGCTAGAAGGCTCGGCCCTGAGACTATTCGAGTCTGTAATGGTTTGACTGCCTTTGAACGGGGTATGGTAGGGGGGAGTGAAATTAATAGGAAGAGGGATAGACTGGAACAAATTAGGGGTAATGGGGAAGGTATGATTGCGGAGAGTGGCTTGGACAAGGGGGAAAGGAAGCGCAATAAGCTGGGCGTGTTTGATTTCAATGAACATGAGAGTATGGATGTGGAGAAGATGAGAAGGAGGCATTTTGATAATAATGGAGTTGGTTTAGGAGGAGGCAGGTTTATGGGATCAGTACATATGGCTAGAAGTGGCATTGATAGGGAATTTGAGACAGGGTCAAGCAGGCACATTCTTGATAAGAGGAAGAACTTGTATCCTGACAGGCCGAGCGGCTTGTATCCAGGGGATAATGTTGATCACAGTAGGCTCAAGATGAACAGGGATGGAGATCAGTTGCCTCTACCCTTGTTGAGGGAGAAGTTTAATTCAGATAAACCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTAGGTGGGCCATTAGAACACTATGCTCATTGCAAACCCGTGGACAGCAGGCAAAGGTTGAAGACTGAAGGGACTGCCAAGGGGAATGTTCTGATTCATCCTGCATCGTACTTTGAAGCAAAACCTTTTCAGAAATCAGGATTACTTGTTAGGCCAGAGAAGAAGCAGATAGCATCCAGAAAATCATTGTCAAGTAAGGATAGTAGGCGGGATGAGTATGATTCAGATAACAGTGACACATCGTTGAATCCAGGAATGAGAAATGTTGAAGCTCACAAACCTGCTAAGAGGATAATCTCTGAGGATGAACAGACTCCTGTGCATGAAAAGCTCCCACCTACAACATCGAAAGAAGGAAAAATCAAGCGTGGTAGTGGCACAGAAAAACAGAAACTGCGAGAAAGAATAAGGGAGATGCTCTTGAATGCAGGCTGGACCATAGACTACCGTCCTCGAAGGAATAGAGACTATCTGGATGCAGTTTACATTAATCCAGCAGGTACTGCCTATTGGTCTATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGAATGATGATGTTAATGAGGCCAAGCCCAAAGGGGATAGTTCTTCCTTCGCTCCTATCGCAGATGAAGTGCTCAGTCAGTTGACAAGAAAAACTAAGAAGAAAATGGAGAAAGAATTAAAGAAGAAAAAAAAGAAGAAAATATATGATAGTGAAAGTGAAAGTGGAAAAGAGCCTCACATAAGAAAATCTGCCAGCAACAAGCATGATATGAATAGCGTGGATAGTGATAGCAATGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGATTGAAAATACCAATGCTAGTGCTAGCTCTAAAAGCCAGAATGCTACCCATCACTCAAATGATGGAATGAAAAAATCATTCTCTGGATGTGATCCTCATATTCTACATGGACGCCAGAGTAGAAAACACGGGAGATGTACCTTGTTAGTTCGTAGTTCTACCAACGGATTAAATTCAGAATCTGATGGCTTTGTCCCGTATACGGGCAAACGGACAGTGCTTTCCTGGTTGATTGACTCTGGGTCAGTTGAGTTAAGCCAGAAGGTTCAATACCGTAGACGGAAGAAAGTACTGCTGGAGGGATGGATCACAAGAGACGGTATTCATTGTGGCTGCTGTAGTAAGATCCTTACAGTTTCAAAGTTTGAACTTCATGCAGGAAGCAAATTACCGCAGCCATATCAAAACATATTTTTGGAATCTGGAGTTTCTCTTTTACAGTGCCAGATAGATGCATGGAGTAGACAAGAGAATTCTGGGAAAATTGGTTTCCATTCAGTTGATATTGACGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGATGCTTCCTCCTGGTGAATGGCATTGTCCAAATTGTACCTGTAAATTTTGTGGAATAGCCAGCGGAACTTCTAAAAAAGAAGTTGATGCAACTGTGTATGTCTTACGTACTTGCAACTTATGTGAGAAAAAATATCATTCTTCTTGTGCTAAGGAGATGGATGCCCTTCCTAATAACTTAAATACATCAGACCTTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTTGGTACCAAGCATGAACTAGAAGCGGGCTTTTCATGGTCTCTTATTCATAGAACATATGAAGACTCAGAGGCAGCTAATGGGGGAATTACCCAGAGGGTGGAATGTAATTCCAAGCTGGCTATTGCACTGACTGTGATGGATGAATGCTTTTTACCTGTTGTTGATCGGAGGAGTGGGATCAATATAATCCGTAATGTTTTATATAATAGTGGGTCAAACTTCAGTCGGTTGAATTATAGTGGATTTTACACTGCTATATTAGAGAAAGGGGATGAAATCATTTCTGCAGCATCTATCAGGTTCCATGGAACTAAGTTGGCAGAGATGCCATTCATTGGGACTCGCAACATATACAGGCGCCAAGGGATGTGCCGCCGACTTTTTTCTGCCATTGAATCGGTAAACCTTGAAGCTATGGTCCTTTGCTCTCTTAAGGTTGAAAAACTGGTTATTCCTGCAATTGCTGAACTCATGCATACATGGACAGCAGTTTTTGGCTTCACACATCTTGAGGAGTCACTCAGGCAAGAAATGAAGTCATTGAATTTGTTGGTCTTCCCTGGCATAGACATGTTACAGAAGCTGTTTGTGGAACAAGGAAAACATGAGGGCAGTACAATTGCTGCAGGTTTGGAGAAACTGAAAAATGGGGATAATGTTTTTATTAAGACCAAAATGGCAAATGGGTCAGATATGGATTCCTCAACTCTGCAAGATTCTCATGGAAGTGATGATGCTAGTTCAAATCCTGCCAATGAGATGAATGATGAATGTAGTGATGCTTCTCAAGGACTTAACAACCAAGTTATGGTTGACAGGACTATGTGTTCCAAATCTCCTTCGGAGGAAAGGCTATCTGATTCTGTTTCAGATAAATTTTCTTCCCCTAGCACGAGTGATGGTGCACCAGAAATGAAAAATAAAACAGTGATGGCTCCTGTTGATAAATTAAATCCTTCTTCTTCCAAATGTCAGTTCGTTCCTCTGAATGGCACTTCTGTGAATTGTAATTCATCAGAGTTTGACATTAACCTGGTGTTGGATTCTCGAGTGGCCCACAATACTCTGCCTTCTAAAGAGGTTTACATGACTGATGCTCATGAGGTTCTTGAAACTGTTCCTTCGCGGAAATTATCTGAAGAGAATATTACCAAGGAGAAAAAAAATGTAGATATCTCCGATTCTGTTCTCAATCATGCTGATGAGAGTTTGTTGCAAGATAGATCAGTTTCCAATGGTGAAATTGGATATGGGGGTGAGAAGAATTTACATTTGAACATAGGAGTTGCTTCAAATGAAATTAATTTTGATGAAAATGACGGAAATGCTTCCAGTGATAGTTCCAAGACTGATCTAACAGATTGA 3864 0.4177 MEPGMRSGGPSGSGVLIKSRNSSGCLIVRKKGDGLCSTATATAGVGSSTSRKMYGSKKRPNVNMSLSDSGSSDELPMPPARRLGPETIRVCNGLTAFERGMVGGSEINRKRDRLEQIRGNGEGMIAESGLDKGERKRNKLGVFDFNEHESMDVEKMRRRHFDNNGVGLGGGRFMGSVHMARSGIDREFETGSSRHILDKRKNLYPDRPSGLYPGDNVDHSRLKMNRDGDQLPLPLLREKFNSDKPIRVQGKNGVLKVMVNKKKVGGPLEHYAHCKPVDSRQRLKTEGTAKGNVLIHPASYFEAKPFQKSGLLVRPEKKQIASRKSLSSKDSRRDEYDSDNSDTSLNPGMRNVEAHKPAKRIISEDEQTPVHEKLPPTTSKEGKIKRGSGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDVNEAKPKGDSSSFAPIADEVLSQLTRKTKKKMEKELKKKKKKKIYDSESESGKEPHIRKSASNKHDMNSVDSDSNEEKLSSFIKQGSKSMKNKMIENTNASASSKSQNATHHSNDGMKKSFSGCDPHILHGRQSRKHGRCTLLVRSSTNGLNSESDGFVPYTGKRTVLSWLIDSGSVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIFLESGVSLLQCQIDAWSRQENSGKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGIASGTSKKEVDATVYVLRTCNLCEKKYHSSCAKEMDALPNNLNTSDLSFCGKECKELFEHLKKYLGTKHELEAGFSWSLIHRTYEDSEAANGGITQRVECNSKLAIALTVMDECFLPVVDRRSGINIIRNVLYNSGSNFSRLNYSGFYTAILEKGDEIISAASIRFHGTKLAEMPFIGTRNIYRRQGMCRRLFSAIESVNLEAMVLCSLKVEKLVIPAIAELMHTWTAVFGFTHLEESLRQEMKSLNLLVFPGIDMLQKLFVEQGKHEGSTIAAGLEKLKNGDNVFIKTKMANGSDMDSSTLQDSHGSDDASSNPANEMNDECSDASQGLNNQVMVDRTMCSKSPSEERLSDSVSDKFSSPSTSDGAPEMKNKTVMAPVDKLNPSSSKCQFVPLNGTSVNCNSSEFDINLVLDSRVAHNTLPSKEVYMTDAHEVLETVPSRKLSEENITKEKKNVDISDSVLNHADESLLQDRSVSNGEIGYGGEKNLHLNIGVASNEINFDENDGNASSDSSKTDLTD. 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00099 1287 MobiDBLite consensus disorder prediction 489 523 - -
Seca10g00099 1287 MobiDBLite consensus disorder prediction 1123 1137 - -
Seca10g00099 1287 Pfam PHD-finger 723 765 IPR019787 -
Seca10g00099 1287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 711 808 IPR013083 -
Seca10g00099 1287 MobiDBLite consensus disorder prediction 40 72 - -
Seca10g00099 1287 MobiDBLite consensus disorder prediction 314 393 - -
Seca10g00099 1287 MobiDBLite consensus disorder prediction 1109 1138 - -
Seca10g00099 1287 MobiDBLite consensus disorder prediction 1062 1094 - -
Seca10g00099 1287 ProSitePatterns Zinc finger PHD-type signature. 723 762 IPR019786 -
Seca10g00099 1287 SMART PHD_3 764 823 IPR001965 -
Seca10g00099 1287 SMART PHD_3 722 763 IPR001965 -
Seca10g00099 1287 MobiDBLite consensus disorder prediction 37 84 - -
Seca10g00099 1287 MobiDBLite consensus disorder prediction 478 571 - -
Seca10g00099 1287 CDD PHD2_CHD_II 723 762 - -
Seca10g00099 1287 Coils Coil 472 492 - -
Seca10g00099 1287 MobiDBLite consensus disorder prediction 524 567 - -
Seca10g00099 1287 MobiDBLite consensus disorder prediction 1267 1287 - -
Seca10g00099 1287 Pfam Tify domain binding domain 645 695 IPR032308 -
Seca10g00099 1287 ProSiteProfiles Zinc finger PHD-type profile. 720 765 IPR019787 -
Seca10g00099 1287 MobiDBLite consensus disorder prediction 317 340 - -
Seca10g00099 1287 MobiDBLite consensus disorder prediction 353 393 - -
Seca10g00099 1287 SUPERFAMILY FYVE/PHD zinc finger 712 768 IPR011011 -
Seca10g00099 1287 PANTHER PHD FINGER PROTEIN 12 344 1145 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00099 Seca-Chr10 998215 1005748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00099 1 1057 PHD Transcription Factor Family AT4G14920 49.534 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca10g00099 TDBD 5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00099 - - gmx:100814247 1795.79