Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00092 ATGCTAGCGAATCATCTCCAAAACGGCATCGAAACGGCAAGGCTAGTTTGGTCGCGGATTCCCAACTCGGAAGAATCACAGTTCCTCGACGACGGCGTTGGCCTCCTCAAAAAGAACGATGGAAGCGGCGTTGAGAGCCTTGACTATGAAGTCATTGAGAATTTTGCTTATCGTGAAGAACAGGCGCAGCGGGGGAAGCTGTATGTGAGTTATTTGCTGGTGGTGAAATGGTTCTTTGCCTTGCTCATTGGCATTTGTACCGGACTTGCTGCTGTTTTCATCAATATTTCTGTTGAAAATTTTGCTGGCTGGAAGTTCTCAGTGACATTTAATATAATTCAGAAATCATATGTTGCTGGCTTTGTCGTATATATCCTGATCAACTTGGTTTTGGTATATTCCTCTGTATATATTGTCACACAATTTGCACCAGCAGCTGCTGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAATGGAGTTGATATTCATGGCATCCTTCTTTTCAGAACTTTGATCGGAAAGATACTTGGAAGCATTGGTTCAGTGGGAGGAGGCCTTGCTTTGGGTAAAGAAGGTCCTCTTGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGAGGATCCACTAAGTATCATCTAAATTCAAGATGGATTAATGTATTTAAAAGTGACCGGGATCGCCGTGATCTTGTGACCTGTGGGTGTGCAGCTGGAGTTGCTGCTGCATTTAGAGCTCCAGTCGGTGGTGTTTTGTGGAGGAGTCAACTCATGTGGCGTGTCTTCTTCACTTCTGCTATTGTGGCTGTTGTGGTACGAACTGCAATGGGGTGGTGTAAGAGTGGAAAATGTGGACATTTTGGGTCAGGCGGATTCATAATATGGGATATATCAGAGTTAAGATCTGAGCTATCATGTTTTTCACTGTCAGTTGATGGTCAAGAGGATTACTCATTTGCAGAGCTATTGCCAATGGCTATTATTGGGGTTGTTGGAGGCCTACTAGGAGCTTTATTTAACCAGCTTACACTTTATATTACTACTTGGCGTCGAAATCATCTTCACAAGAAAGGGAACCGAGTCAAGATTATTGAAGCGTGCCTTGTCTCCCTTTTAACATCAGCCATTTCATTTGGCTTGCCACTTCTAAGAAAATGCAGTCCATGCCCTGAATCTGATCCTGCCTCTGGTATTGAATGTCCACGTCCTCCTGGAATGTATGGGAATTATGTAAATTTCTTTTGTAGCAAAGACAATGAATACAATGATCTTGCAACTATTTTCTTCAATACACAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAGTAAATGAATACAGCTCCCAAAGTCTATTAACCTTTTTGGTTATGTTTTATGCTTTAGCAGTTGTGACGTTTGGTACTGCCGTGCCAGCTGGTCAATTTGTTCCTGGTATAATGATAGGATCAACATATGGACGTCTTGTTGGCATGCTTGTTGTAAAACATTACAGAAAACTCAACATTGAAGAGGGAACGTATGCTTTGCTAGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTATGTGTCATTATGGTTGAAATCACAAATAACTTGAAACTTTTACCCCTTATTATGCTTGTCCTTCTTATATCAAAGGCTGTTGGTGATGCTTTTAATGAGGGCATCTATGACGAGCAGGCTCGATTGAGGGGCATTCCATTACTGGAATCAAGGCCTAAATATGAGATGCGAAATATGACAGCAAAGGAGGCCTGTGGGAGTGGAAGGGTGGTCTCTTTCCCTCGTGTTGTCAAGGTTTCAGACGTAGTTTCCATTCTGCAGAGCAACAAACACAATGGTTTTCCAGTGATTGATCACACAAGAAGTGGAGAACCACTTGTTATTGGATTAGTGCTTCGGAGTCATTTATTGGTAATTCTTCAATCAAAGGTTGATTTCCAGCATAGTCCTTTGCCCTCAGATCCAAGAGGTGGGGGCAGGTCAATACGCCATGATTCTGGTGAATTTGCAAAGCCTGTTTCTAGTAAAGGAATATGTCTTGATGATATACATCTAAGTTCAGATGACTTGGAAATGTACATAGACCTTGCCCCATTTTTGAATCCCTCACCATATATTGTACCCGAAGATATGTCTCTGACAAAGGTATATAATCTTTTCCGCCAACTTGGTTTGAGACATTTATTTGTTGTTCCCCGTCCATCACGTGTGCTTGGCTTGATAACCAGAAAAGATTTGTTAATTGAGGACACAGAAAATGTGAATACATTAGAGCTCCATGCAACTAGTGTAAGGTCTCTGATGCTTTACTCATTTTACATCCTATTCAGTTTTTTCAAATTTTAA 2376 0.4158 MLANHLQNGIETARLVWSRIPNSEESQFLDDGVGLLKKNDGSGVESLDYEVIENFAYREEQAQRGKLYVSYLLVVKWFFALLIGICTGLAAVFINISVENFAGWKFSVTFNIIQKSYVAGFVVYILINLVLVYSSVYIVTQFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKILGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWINVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFGSGGFIIWDISELRSELSCFSLSVDGQEDYSFAELLPMAIIGVVGGLLGALFNQLTLYITTWRRNHLHKKGNRVKIIEACLVSLLTSAISFGLPLLRKCSPCPESDPASGIECPRPPGMYGNYVNFFCSKDNEYNDLATIFFNTQDDAIRNLFSAKTVNEYSSQSLLTFLVMFYALAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMLVVKHYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGIYDEQARLRGIPLLESRPKYEMRNMTAKEACGSGRVVSFPRVVKVSDVVSILQSNKHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGGRSIRHDSGEFAKPVSSKGICLDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDTENVNTLELHATSVRSLMLYSFYILFSFFKF. 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00092 791 FunFam Chloride channel protein 702 783 - -
Seca10g00092 791 Pfam CBS domain 711 757 IPR000644 -
Seca10g00092 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 35 762 - -
Seca10g00092 791 Pfam Voltage gated chloride channel 134 558 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g00092 791 SUPERFAMILY Clc chloride channel 54 580 IPR014743 -
Seca10g00092 791 CDD ClC_6_like 45 578 - -
Seca10g00092 791 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g00092 791 PRINTS Chloride channel signature 474 494 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g00092 791 PRINTS Chloride channel signature 565 579 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g00092 791 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g00092 791 PRINTS Chloride channel signature 527 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g00092 791 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g00092 791 PRINTS Chloride channel signature 509 525 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g00092 791 Gene3D - 599 763 IPR046342 -
Seca10g00092 791 SMART cbs_1 599 651 IPR000644 -
Seca10g00092 791 SMART cbs_1 713 761 IPR000644 -
Seca10g00092 791 Gene3D Clc chloride channel 69 579 - -
Seca10g00092 791 CDD CBS_pair_voltage-gated_CLC_euk_bac 600 757 - -
Seca10g00092 791 PRINTS Plant CLC chloride channel signature 426 442 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca10g00092 791 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca10g00092 791 PRINTS Plant CLC chloride channel signature 265 275 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca10g00092 791 SUPERFAMILY CBS-domain pair 583 757 IPR046342 -
Seca10g00092 791 ProSiteProfiles CBS domain profile. 710 767 IPR000644 -
Seca10g00092 791 FunFam Chloride channel ClC3 68 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00092 Seca-Chr10 942149 952406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00092 1 777 Ion Channels AT5G26240 81.321 0.0 1226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00092 K05016 - gmx:100811908 1394.02