Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00086 ATGAAGGAAGAATTGTCAGGGGAGGGGAAATTTAATGTTCTGTTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCATTGGCGTTACTTGATTGTGGATGAAGGGCATCGATTGAAGAATCACGAGTGTGCTCTAGCAAGAACCCTGGACTCTGGCTATCACATTCAACGAAGACTTCTGTTGACCGGTACCCCAATTCAGAATAGTTTGCAGGAGTTGTGGTCGCTGCTTAATTTTCTACTTCCCAACATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGTTACTGATCATTCGGCGTCTTCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAGGATGAGGTAGAAAAATATCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCTGCCTGGCAGAAAGTATATTATCACCAAGTCACTGACGTGGGCAGAGTTGGCTTGGACAATGGTTCTGGAAAATCAAAAAGTCTACAAAACTTGACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAGACTATGATATGTATAAACGTAAGGAGGAGATTGTTAGAGCATCAGGGAAATTTGAACTTCTTGACCGTTTGCTTCAAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTTTCACAAATGACTCGTCTCATGGACATTCTTGAAATTTATCTGCGACTTCATGATTTTAAATTTCTTAGACTTGATGGCTCTACAAAAACTGAGGAAAGAGGTTCCCTACTACGGAAATTCAATGCTCCTGACTCTCCGTACTTTATGTTTCTCTTGAGCACTCGTGCTGGAGGTCTTGGTTTAAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGACAAAAGAAAGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCTAAACAGAAGATGGGGATTGATGCCAAAGTTATTCAGGCAGGGCTTTTCAATACTACTTCAACAGCCCAGGACAGAAGAGAGATGTTGGAGGAGATTATGCGTAGAGGTACTAGCTCACTTGGGACAGATGTGCCGAGTGAGAGAGAAATTAACCGCCTTGCGGCCCGATCTGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGGAGGCTGAAGGAGAATTACAGATCTCGTCTCATGGAAGAGCATGAGTTACCAGATTGGGTATACTCTGCACTAAATAAGGATGATAAGGTCAAGTTTTTTGACAGTGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACGTTGAGCGATCTACAATGGATGAAGGCTGTGGAGAACGGACATGATATATCTAAGCTTTCAGTTAAAGGGAAAAGAAGATACCACCTCCCTGTGGACAGCCATGCACAAGCCAGTGATGACTTGGGGACAGAAGAAAGATTATTAGAATTAAGGAATGGAAGTGTTCCCATGGCCAATGAGAGATCAAGTGAAGACACATTCAATGTTACCCCTGCCTCTAAGAGGCTCAAGCATGAACAAATAAATACCCAGAAACATGAAAACGAGGATGTCGGAGTAAGTAGTTTGAACGAGCATATGTTTTCCTGGAATACTCACAGAAAGAAGAGATCAAACTATCTTGGGCAGGGTTCATTATCTGATACTAGAGGGCAGAATGCAAATGGAAAAGCAAACTGGAACTGA 1851 0.4138 MKEELSGEGKFNVLLTHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYHQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKRKEEIVRASGKFELLDRLLQKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRLKENYRSRLMEEHELPDWVYSALNKDDKVKFFDSGSVTGKRKRKEVVYADTLSDLQWMKAVENGHDISKLSVKGKRRYHLPVDSHAQASDDLGTEERLLELRNGSVPMANERSSEDTFNVTPASKRLKHEQINTQKHENEDVGVSSLNEHMFSWNTHRKKRSNYLGQGSLSDTRGQNANGKANWN. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00086 616 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 89 IPR014001 -
Seca10g00086 616 Pfam SNF2-related domain 9 202 IPR000330 GO:0005524|GO:0140658
Seca10g00086 616 Gene3D - 1 135 IPR038718 -
Seca10g00086 616 SMART SnAC_2 428 489 IPR029295 GO:0042393
Seca10g00086 616 FunFam Probable ATP-dependent DNA helicase CHR12 142 441 - -
Seca10g00086 616 Gene3D - 142 440 IPR027417 -
Seca10g00086 616 PANTHER SNF2/RAD54 HELICASE FAMILY 2 554 - -
Seca10g00086 616 Pfam Snf2-ATP coupling, chromatin remodelling complex 430 489 IPR029295 GO:0042393
Seca10g00086 616 CDD SF2_C_SNF 211 346 - -
Seca10g00086 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 136 IPR027417 -
Seca10g00086 616 SMART helicmild6 251 335 IPR001650 -
Seca10g00086 616 Pfam Helicase conserved C-terminal domain 222 335 IPR001650 -
Seca10g00086 616 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 225 392 IPR001650 -
Seca10g00086 616 MobiDBLite consensus disorder prediction 594 616 - -
Seca10g00086 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 389 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00086 Seca-Chr10 865115 872192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00086 28 362 RAD5 or RAD16-like Gene Family AT1G02670 27.407 3.89e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca10g00086 SNF2_N 6.6e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00086 - - gmx:100775993 1127.85