Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00084 ATGAAAAAAAGAAAAAAAAAGAAGTGTGACCATTTCAAAGCGAGGTTCTCGCAAACCCAAACCCAAACCCAATCTCTATTCTCTAGCGAAGAGGAGAGAAGGAAGACGATGGGTATGATGCTACAAACCATTGTGACTGTGGTTCTTCTCCTTATGCTTCTTCTCATCATCATCTTCCTCTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTTTCTTGGCACTTCGGCTCTTCTATCAAGGGTGATTTAGAGAGGCCCCTCGTTGATGATGAAGACGATGCAGACGTTTCATTTAATCAGAGCAATGAACTGCCTAGAGATTATGATCTTGAAGGTGCCTGTTATCCCAATGAAGCTCATTATCGATCACCTCGAACCCATGGCCAAGGACTTGTTCATAAGCAAAGGCTTCAGTCTCAGGCCCAGGCCCTTTCCGTTTCATCTAATTTACCCCAAGGTGGTGATACTTTGATTGTAGATGTAATCTCTGATCCTTCTGAAGACGTTGATGTTGGTCAAACACTTAAGCTCTCTCCAGCTCATTTAGCTCACATTCAAAACCATACCACTCCTAATTTTCAAAATGATAGACTGCAAGACTTTGTGCAAAGAGATATATCTGATCAAAGAAGTTGCCTCACTCTGGAGGTTATCAGTGGTCCTTCTCGTGGACTTCGTTGTTCTGTACAATCAACAAATCCCTCTCGTCTGCCACTAACCTTGGGAAGAGTTTCCCCAAGTGATTTATTGATAAAGGATTCAGAAGTGTCAGGAAAGCATGCATTGATAAAGTGGAATTTGGATAAGATGAAATGGGAGTTGGTGGATATGGGTAGCCTAAATGGAACACTTTTGAATTCTAAGCCAATCAATCATCCAGACACTGAAAGTAGGCATTGGGGAGATCCAATGAATCTTGCTAATGGAGATATTATAACACTTGGAACAACATCAAAAGTAATTGTTCACATTACTTCGCAAAATCAGCATCACATTCCCTTTGGAGTTGGTATGGCATCTGATCCCATGGCTTTGCGTCGAGGAGGAAAAAAGCTTCCCATGGAAGATGTTTGCTATTATCAATGGCCTCTACCTGGGCTCGATCAGTTTGGAATTTTTGGCATTTGTGATGGGCATGGTGGAGATGGGGCTGCCAAATCTGCTAGCAAGTTAGTATTTTCTGCCCTAGGTTGGCCATGA 1200 0.4225 MKKRKKKKCDHFKARFSQTQTQTQSLFSSEEERRKTMGMMLQTIVTVVLLLMLLLIIIFLFFLFKPWRFFFSWHFGSSIKGDLERPLVDDEDDADVSFNQSNELPRDYDLEGACYPNEAHYRSPRTHGQGLVHKQRLQSQAQALSVSSNLPQGGDTLIVDVISDPSEDVDVGQTLKLSPAHLAHIQNHTTPNFQNDRLQDFVQRDISDQRSCLTLEVISGPSRGLRCSVQSTNPSRLPLTLGRVSPSDLLIKDSEVSGKHALIKWNLDKMKWELVDMGSLNGTLLNSKPINHPDTESRHWGDPMNLANGDIITLGTTSKVIVHITSQNQHHIPFGVGMASDPMALRRGGKKLPMEDVCYYQWPLPGLDQFGIFGICDGHGGDGAAKSASKLVFSALGWP. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00084 399 CDD FHA_PP2C70-like 213 323 - -
Seca10g00084 399 Gene3D - 343 397 IPR036457 -
Seca10g00084 399 ProSiteProfiles Forkhead-associated (FHA) domain profile. 239 290 IPR000253 GO:0005515
Seca10g00084 399 FunFam Protein phosphatase 2C 70 208 342 - -
Seca10g00084 399 SUPERFAMILY PP2C-like 348 396 IPR036457 -
Seca10g00084 399 ProSitePatterns PPM-type phosphatase domain signature. 372 380 IPR000222 GO:0043169
Seca10g00084 399 Pfam FHA domain 240 315 IPR000253 GO:0005515
Seca10g00084 399 SUPERFAMILY SMAD/FHA domain 211 322 IPR008984 GO:0005515
Seca10g00084 399 PANTHER ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1 238 325 - -
Seca10g00084 399 SMART FHA_2 238 290 IPR000253 GO:0005515
Seca10g00084 399 Gene3D - 207 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00084 Seca-Chr10 853811 856145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00084 37 397 PP2C-type Phosphatase Gene Family AT5G19280 51.852 4.62e-118 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00084 K01090 - gmx:100170642 550.436