Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00080 ATGAGCAGCAATGAGATCGGCCAGAAGCCTCCGCCATCGATACTCGTTGCCCGATTCAAGGCCTTGCTCAAGCAACGCGACGATGACCCGAGGTTAAGGGCTTCGCTTCCCACCACTGAAGAAATTGTTCAGATTTATGAGTTGTTGTTGTCCGAACTCACCTGCAATGTTAAGCCCATCATCACTGATCTTACAATCATTGCCGAGCAGCAGAGGGAACATTCCAAGGGCATCGCTGAAGCTATTTGCGCTCGGATTCTTGAGGTGCCTGCAGATCAAAAGCTTCCTTCACTCTATCTTTTGGACAGTATTGTGAAGAATGTTGGCCAGGAATATGTTAGATACTTCTCTTTACGCCTACCTGAAGTAGTTCTATTGTCTCCCAAGGTTTTCTGTGAGGCATACAGACAGGTTCAACCGAATTTGCATTCTGCCATGCGACATCTCTTTGGTACCTGGTCAAAAGTCTTCCCTCCCTCTGTCCTACGCAAGATTGAAGCTCAATTGCAATTTTCTCAAGCAGTTAATAATCAACCATCCGGTGTTAATCCTCTCAGGAACTCTGAAACTCCTCGACCAACACATGGGATACATGTTAATCCAAAATACGTTGGAGGTGAAAGACTGGACTCAACAGGAACTGTAGGTAATGCAAGTTTTGGCCTTGTACCTAGTAAGATCCATCCATTTATGCCTAGTAGGCTTGGAAGGTCCTCCTCACCTTCAAGAATTGGACTTGATAGGCCATTGGCCACATATATGGATGAATATGCAGCTGACAATTCTGCTGGCAGGACAGTTGAGAGAGAATCTCCTCATCCCACAGTTGATTATGGAGTAGCTAAAGTGTTAGGTAGAGAAGAAGAGTTGGGTGAGTGGCAGCGAAAGCAGTTTTCTGGTGATATTCGGAAGAGGTTTCAAACTTCTATGACACACAGTCTTAGTAATGGACAACAGCGTCAAAGTCCAAGGGCTCTAATAGATGCATATGGCAGTGACAAAAGCCAAGAAACTTCTAGCAGTAAAGCTTTGTTAGTTAAACGGCTGGATAGAAATGGTATAGACAAGGTTGTGACAACATCATGGCAGAATACTGAAGAGGAGGAATTTGATTGGGAAGATATGAGTCCAACATTAGTAGACCATAGTAGAAATAATGGTTTCCTGCAATCAACTATTGGTTTCACCACGGAAAAACCTGTTATTATTCCTGCTAATGCAACTTCTTCAGAACAGGATACCAGGAAGGGTTGGTCTAGTGGGTCTCAGCTTCCTCCAGTGGATGATTCCTCTGTTTTAGCAGAAGATGCATTTGCCTCTTCAGCTGTATGTTTCCTCAACTTTTCTCTTTTATCTTTCTAA 1362 0.4383 MSSNEIGQKPPPSILVARFKALLKQRDDDPRLRASLPTTEEIVQIYELLLSELTCNVKPIITDLTIIAEQQREHSKGIAEAICARILEVPADQKLPSLYLLDSIVKNVGQEYVRYFSLRLPEVVLLSPKVFCEAYRQVQPNLHSAMRHLFGTWSKVFPPSVLRKIEAQLQFSQAVNNQPSGVNPLRNSETPRPTHGIHVNPKYVGGERLDSTGTVGNASFGLVPSKIHPFMPSRLGRSSSPSRIGLDRPLATYMDEYAADNSAGRTVERESPHPTVDYGVAKVLGREEELGEWQRKQFSGDIRKRFQTSMTHSLSNGQQRQSPRALIDAYGSDKSQETSSSKALLVKRLDRNGIDKVVTTSWQNTEEEEFDWEDMSPTLVDHSRNNGFLQSTIGFTTEKPVIIPANATSSEQDTRKGWSSGSQLPPVDDSSVLAEDAFASSAVCFLNFSLLSF. 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00080 453 SUPERFAMILY ENTH/VHS domain 38 170 IPR008942 -
Seca10g00080 453 ProSiteProfiles CID domain profile. 38 173 IPR006569 -
Seca10g00080 453 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 37 430 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Seca10g00080 453 Gene3D - 33 171 IPR008942 -
Seca10g00080 453 SMART 558neu5 41 170 IPR006569 -
Seca10g00080 453 MobiDBLite consensus disorder prediction 176 203 - -
Seca10g00080 453 CDD CID_Pcf11 46 170 IPR047415 -
Seca10g00080 453 FunFam polyadenylation and cleavage factor homolog 4 35 170 - -
Seca10g00080 453 Pfam CID domain 56 164 IPR006569 -
Seca10g00080 453 MobiDBLite consensus disorder prediction 176 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00080 Seca-Chr10 789805 793344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00080 15 393 C2H2 Transcription Factor Family AT4G04885 47.244 1.46e-97 308