Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00079 ATGGAATTGAAAATTCGCATATTCTCTCTGCAGTATAGTCGTGTATCACTGGGTCAGGTATCTGGATTCCAGAATCAAATAAATCAGAGTCTGGGCTCTGGTCAACATATTGATGCTTGGAAGATTTCTAATCATCCATCTAATTCTACACAACATCTGTTTAATATTAGGGGAGGAGGAAGGAGTCTTCTGATGCCTCCAATTGATAACATTCCCAATACTGATGTACATTCTTATGGGACTCGACTGGCTGTGTCAAGGATGGTTCCTGGTCTCAAGTCTAATGTGGAGGGTTCTCCGCCAATTTTGCCAGCTACTTTTGAAATGAGGCCCTCTTTAAATGTGCATGCTGCTCGTCCTCCCAGTTTAAATCCTATATTTCCATTGAAAAATCTTGGTAGGAGTCAATTTGAATCAATAAATGCTAATAATACCATTATGAGTCATGGTCCAAATAAATCTTTGCTTATGCGTGAACAATCATTGCACAATGTTGAGAACAAAGATATCAGTAAGGGAAACCTACATCATTTACCTAATCAGCTAGCTGGCCTGATTTCATCTAACCCGCAAAACCGTGGACAATCACCACAACCACAGTTTTTTCCATCTCAGGATCCAGCAGGATCACAATTTAGTTGTGGGAGCTCTTTGCAAGTACATGGTGCTGCTATAATTACACCCATGTCAAATGTGCCACCTGTTATGCCATTCCCTTTACCCGGCCAAAGTATTGCAAATAACTCTTTACATTCACAGGGGGGAACCTTGCCACCTTTACCTCCAGTGCGCCCTCCTGCTCCATCACAAATGTTACCTCATCCTAATCCTAGTCCTTTTGTGTCAAGTCAACAGCCAACTGTTGCGTATTCTAATTTGATTAATACACTCATGGCCCAAGGTGTAATCTCATTGACCAATCAGGCCCCTGTACAGGATTCTGTTGGAATTGAGTTTAATCCAGATATGCTGAAGATACGACATGAATCTGCAGTCAGTGCCTTGTATGGTGATCTCCCTAGACAATGCACAACTTGTGGTCTCCGATTCAAATGCCAAGATGAGCACAGTAATCACATGGATTGGCATGTGACGAAGAACCGGATGTCTAAAAACCGTAAGCAGAAGCCTTCTCGTAAATGGTTTGTGAGTGAAAGGATGTGGCTCAGTGGTGCAGAGGCATTGGGAACGGAATCAGTTCCAGGTTTTTTGCCAACTGAGACCATCGAGGAAAAGAAAGAAGATGAAGAGTTGGCTGTTCCTGCTGAAGAAGACCAGAATACGTGTGCGTTATGTGGTGAGCCTTTTGATGAGTTTTACAGTGACGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATATCTTAATGCACCCAAGGGAACAACAGGAGGCATGGACAGGTCACAGTTAGGCCCCATTATTCATGCTAAATGCAGATCTGAATCTAGTATGGCCCCATCTGAAGATTTTGGGCTGGATGAAGGGGGCACCTTTGAGGAAGGCAATCAAAGAAAACGAATGCGGAGTTGA 1530 0.432 MELKIRIFSLQYSRVSLGQVSGFQNQINQSLGSGQHIDAWKISNHPSNSTQHLFNIRGGGRSLLMPPIDNIPNTDVHSYGTRLAVSRMVPGLKSNVEGSPPILPATFEMRPSLNVHAARPPSLNPIFPLKNLGRSQFESINANNTIMSHGPNKSLLMREQSLHNVENKDISKGNLHHLPNQLAGLISSNPQNRGQSPQPQFFPSQDPAGSQFSCGSSLQVHGAAIITPMSNVPPVMPFPLPGQSIANNSLHSQGGTLPPLPPVRPPAPSQMLPHPNPSPFVSSQQPTVAYSNLINTLMAQGVISLTNQAPVQDSVGIEFNPDMLKIRHESAVSALYGDLPRQCTTCGLRFKCQDEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESVPGFLPTETIEEKKEDEELAVPAEEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPKGTTGGMDRSQLGPIIHAKCRSESSMAPSEDFGLDEGGTFEEGNQRKRMRS. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00079 509 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 110 494 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Seca10g00079 509 ProSitePatterns Zinc finger C2H2 type domain signature. 343 363 IPR013087 -
Seca10g00079 509 MobiDBLite consensus disorder prediction 249 269 - -
Seca10g00079 509 MobiDBLite consensus disorder prediction 480 509 - -
Seca10g00079 509 MobiDBLite consensus disorder prediction 184 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00079 Seca-Chr10 786408 789222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00079 281 509 C2H2 Transcription Factor Family AT4G04885 70.742 3.44e-112 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00079 K14400 - gmx:100794796 687.182