Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00074 ATGGGTACCCAAGAATCTCTGTTAGTATTAGACAATCCGAGAAAATCCCTTTCCAAAACTCTCTGGTTACTCCTCTCTGTAGCTTCTGTTGTATGCTCATCAGTCCTTCTTGCTTCTTATCTCATCAAACCCACCTCCTTGCCTCATCACCATGCCTGTGAACATGCACTTGATTCACCATCCTGCTTAGCCCATGTCTCACAACTAACTCAAGGCCCGATCTTCACCAGTACTAACAAATTCAATTTGCTCCAATCCTTCCTAATGAAGTCCACCTCACACATTAAGAAAGCTATGGACACAGCCAATGCTATCAAACTCAAGATTAACAATCCGAAGGAGGAAGCAACTTTGCACAACTGTGAACAGCTAATGGACTTGTCCATGGATAGAGTTTGGGACTCCATGATGGCTCTAACAAAAGAGGCCACTGATTCGCTGCAACTGCAAGATGCACACACGTGGCTAAGCAGTGTGCTCACTAACCATGTCACTTGCTTGGATGGATTAGAGGGCTCAGCCCGGGCCTTGATGGAGGCCCAGCTTCAGGACCTGATAACCAGAGCAAGGACCTCCCTGGCCTTGCTTGTTGATGTTTTGCCCCCAAATCCAGGCCTCATTGATGAGCCACTCAGCATTGGGGATTTCCCCTCATGGGTGACAAGCAAGGATCGGAGGCTTTTGGAGTCTTCAGCTGGGGAGATCAAGCCCAATGTTGTGGTGGCTAAGGATGGGAGTGGCAAGTTCAAGACTGTTGCTGAGGCTGTGGCATCCGCACCCGACAACAGTAAGACAAGGTACGTTATCTATGTCAAGAAGGGAACGTACAAAGAAAATGTTGAAATTGGTAAGAAAAAGAAGAATGTGATGCTTGTGGGTGAAAGTATGGATGCAACGATAATCACCGGCAGCTTGAACTATGTCGATGGAACAGGCACCTTTGATACTGCCACTGTTGCTGCTGTTGGAGATGGGTTTATAGCCCAGGACATATGTTTTCAAAACGCAGCAGGTCCACAGAAGCATCAGGCAGTGGCTCTCCGCGTCGGCGCTGACATGTCCGTCATAAACCGCTGCCGCATTGACGCCTATCAAGACACTCTCTACGCCCACACCAACAGGCAGTTCTACCGTGACTCTTACATTACCGGCACTGTGGATTTCATCTTTGGAAATGCAGCTGTGGTCTTCCAGAAGTGCAAGCTGGTGGCCCGAAAGCCCATGGATAACCAGAAAAACATGATCACGGCCCAAGGACGAATAGATCCAAACCAGAACACAGGAACATCAATTCAGCAATGTGACCTGACACCAAGCTCAGATCTTAAGCCCGTTGTGGGCTCCATAAAAACTTATCTGGGCCGCCCATGGAAGAATTTCTCTAGAACCGTTGTGATGCAATCCTTTCTGAGCACTCATATTGACCCAACAGGATGGGCAGAATGGGATGCCGAGCATAAGGACTATTTGAAAACGTTATATTATGGAGAATACATGAACAAAGGGCCTGGTGCTGGTATAAGCAAGAGAGTGAATTGGCCCGGTTACCATGTCATCAAAAGTGCAACAGAGGCCAGTAAGTTTACAGTAACACAGCTCATCCAAGGTAATGTTTGGTTGAAAGACAAGGGGGTGAACTACATAGAGGGCCTGTAG 1656 0.4771 MGTQESLLVLDNPRKSLSKTLWLLLSVASVVCSSVLLASYLIKPTSLPHHHACEHALDSPSCLAHVSQLTQGPIFTSTNKFNLLQSFLMKSTSHIKKAMDTANAIKLKINNPKEEATLHNCEQLMDLSMDRVWDSMMALTKEATDSLQLQDAHTWLSSVLTNHVTCLDGLEGSARALMEAQLQDLITRARTSLALLVDVLPPNPGLIDEPLSIGDFPSWVTSKDRRLLESSAGEIKPNVVVAKDGSGKFKTVAEAVASAPDNSKTRYVIYVKKGTYKENVEIGKKKKNVMLVGESMDATIITGSLNYVDGTGTFDTATVAAVGDGFIAQDICFQNAAGPQKHQAVALRVGADMSVINRCRIDAYQDTLYAHTNRQFYRDSYITGTVDFIFGNAAVVFQKCKLVARKPMDNQKNMITAQGRIDPNQNTGTSIQQCDLTPSSDLKPVVGSIKTYLGRPWKNFSRTVVMQSFLSTHIDPTGWAEWDAEHKDYLKTLYYGEYMNKGPGAGISKRVNWPGYHVIKSATEASKFTVTQLIQGNVWLKDKGVNYIEGL. 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00074 551 PANTHER PECTINESTERASE 35 541 - -
Seca10g00074 551 Gene3D - 232 551 IPR012334 -
Seca10g00074 551 ProSitePatterns Pectinesterase signature 1. 263 282 IPR018040 -
Seca10g00074 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 195 IPR035513 -
Seca10g00074 551 Pfam Plant invertase/pectin methylesterase inhibitor 51 185 IPR006501 GO:0004857
Seca10g00074 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 199 IPR035513 -
Seca10g00074 551 NCBIfam pectinesterase inhibitor domain 20 175 IPR006501 GO:0004857
Seca10g00074 551 SUPERFAMILY Pectin lyase-like 236 550 IPR011050 -
Seca10g00074 551 SMART PMEI_2 43 195 IPR006501 GO:0004857
Seca10g00074 551 CDD PMEI-like_4 55 197 - -
Seca10g00074 551 ProSitePatterns Pectinesterase signature 2. 382 391 IPR033131 -
Seca10g00074 551 FunFam Pectinesterase 232 551 - -
Seca10g00074 551 Pfam Pectinesterase 238 537 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00074 Seca-Chr10 730070 732002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00074 9 551 Carbohydrate Esterase AT1G11580 54.955 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00074 K01051 - gmx:100815836 830.861