Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00066 ATGATGAAGAGAAAGTCTAGTTCAGGTCGCCAGAGGATTCCAATCGCGAAAATATCCAAAAAGAGTCATTTACAAGTTACGTTTTCAAAGTGTCGTTCAGGATTTTTTAAAAAGGCCAGCGAGCTTTGCACACTTTGTGGAGTAGAAATTGCAATTATAGTTTTCTCTCCAGCTGATAAGGCCTTTTATTTCGGCCACCCAGATGTTGAATCCATAATTGATTGCTATCTGACTCAAAACTCTCTGTTAGACCCGAGTACTCACCAACTTGTTGATGTTCATCGTAATGCTGATGTCAATAATCTCAACATGAAACTTAGTCAGACTCTTAATCAATTGGAGATTGAGAAAAAGCGAGGAGAAAAGCTAAATCGAGTTCGGAAAGCTGGGGAGAGACAGTTCTTGTGGGAGATCTCCGTTGATCAGCTTGGATTGCATGAGTTACAACATTTAATGTTTTCGATTGAAGAGCTAAAGAAGAATGTTGCAAAATATGTTATTGCTAACAAAATGTTGAAGGAGCAAACCAAAACCAGTATTACTTCACCAATTATTGGGCCTGGGTCAATTGACACTGAGTGTTATGATGCCTTCACGAACAAACATGTTGAGATTTATGCTAGTTCTTTCACTTTTGCCCATACCTCTAGCATGAGTTTTCGTTACTAA 669 0.3857 MMKRKSSSGRQRIPIAKISKKSHLQVTFSKCRSGFFKKASELCTLCGVEIAIIVFSPADKAFYFGHPDVESIIDCYLTQNSLLDPSTHQLVDVHRNADVNNLNMKLSQTLNQLEIEKKRGEKLNRVRKAGERQFLWEISVDQLGLHELQHLMFSIEELKKNVAKYVIANKMLKEQTKTSITSPIIGPGSIDTECYDAFTNKHVEIYASSFTFAHTSSMSFRY. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00066 222 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca10g00066 222 Coils Coil 155 175 - -
Seca10g00066 222 Coils Coil 96 123 - -
Seca10g00066 222 Gene3D - 88 180 - -
Seca10g00066 222 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca10g00066 222 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca10g00066 222 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca10g00066 222 PANTHER MADS BOX PROTEIN 10 163 - -
Seca10g00066 222 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Seca10g00066 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Seca10g00066 222 SUPERFAMILY SRF-like 9 80 IPR036879 GO:0003677|GO:0046983
Seca10g00066 222 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Seca10g00066 222 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00066 Seca-Chr10 622755 623423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00066 7 162 Type I MADS-box Gene Family AT2G24840 49.057 1.75e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca10g00066 SRF-TF 1.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00066 - - qsu:112040126 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00066 10 622755 623423 Seca10g00066 10 622755 623423 ECH