Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00048 ATGGAGGAGGGTAGTGAGCGGATTTCGGAAGAATGGAGTTGTCTGAGTGGAGTGTACACAGCAGAGGAAGCTGACTTTATGACTCACTTACTTGATGATGTTTCCTTTTCTGTTCCAGACAATCATGCATTTTGGTCTGCCCATACCCATCATGAATCCACAATCACTACTACTACCTATCCTTCAACTTCAATACTTGCTGCTAATAATAATACTAATTTGTTCTGTTTCTCCCAAGAGACCTCCACTGATCATATTCATATCTTTCCCACTACAAGTAGTGAAGATCTTGACCCGCCAATTAATTTTGGCTCCATGGGGAATAGTAATTCCAATTATACTTCTCACAACTTAAGCCAACACACACACCAAACCACTGATGATCAAGTAGTGTCCCCACAAAAACTACCGGTTCTTGCTTTTCAGCCTAACCTTGAGTGTGAAATGCTACTTTCTGAATCTGCGATAGAGGAGGACCTGGTCCTGGACAACCCACCCAAAAGATTTAAGAGCTCAATCACAATGGATCAGGTCTCAGAGAACAGGAAGAATGCTAAATCAAAGAAGAATCCAACATCTGCTTCTAATTCTATGACTATGGAGCTTATAAAAAGAGGGGCATCTTCAACTTCAAAAGATTCAAATTGCAAATCAAAACCTAACAACAGAGGTCCTGCCACTGATCCACAAAGCCTTTATGCAAGAAGAAGAAGAGAAAGAATCAATGAAAGATTGAAAGTTCTACAAAATCTTGTCCCTAATGGAACCAAGGTGGATATCAGTACCATGCTTGAGGAAGCTGTCCAATATGTCAAGTTTTTGCAACTCCAAATTAAGCTTCTGAGCTCTGACGATATGTGGATGTATGCTCCCATTGCTTACAATGGAATAAACATCGGACTTGACCTCAATATTAATTCCTTCAACAAAACAATCACAACACAACAATTAAAGAGGAATTAG 963 0.3977 MEEGSERISEEWSCLSGVYTAEEADFMTHLLDDVSFSVPDNHAFWSAHTHHESTITTTTYPSTSILAANNNTNLFCFSQETSTDHIHIFPTTSSEDLDPPINFGSMGNSNSNYTSHNLSQHTHQTTDDQVVSPQKLPVLAFQPNLECEMLLSESAIEEDLVLDNPPKRFKSSITMDQVSENRKNAKSKKNPTSASNSMTMELIKRGASSTSKDSNCKSKPNNRGPATDPQSLYARRRRERINERLKVLQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDMWMYAPIAYNGINIGLDLNINSFNKTITTQQLKRN. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00048 320 Gene3D - 227 282 IPR036638 GO:0046983
Seca10g00048 320 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 85 297 - -
Seca10g00048 320 SMART finulus 231 280 IPR011598 GO:0046983
Seca10g00048 320 MobiDBLite consensus disorder prediction 166 233 - -
Seca10g00048 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 224 291 IPR036638 GO:0046983
Seca10g00048 320 Pfam Helix-loop-helix DNA-binding domain 235 275 IPR011598 GO:0046983
Seca10g00048 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 274 IPR011598 GO:0046983
Seca10g00048 320 MobiDBLite consensus disorder prediction 188 228 - -
Seca10g00048 320 FunFam Basic helix-loop-helix transcription factor 226 283 - -
Seca10g00048 320 CDD bHLH_AtIND_like 226 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00048 Seca-Chr10 423148 424702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00048 11 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 36.769 1.98e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g00048 HLH 3.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00048 - - gmx:100817334 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00048 10 423148 424702 Seca10g00048 10 423148 424702 ECH
Seca10g00048 10 423148 424702 Seca8g07698 8 174249547 174251299 PCT