Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00047 ATGGCTTTGGAGGCTCTAAATCTAAATTCTCCAATGATGAGCGTAGAGGAAGAGGTGAAGAGGAAGCGATCCAAACGACCCCGTTTAGATATCCCATCCAATTCCAATTGTACAGAGGAAGAGTACCTTGCTCTCTGTCTCATCATGCTCGCCCACAACAAGACAGAACCAGAACCAGAGAGTCACAAGTGCAGCATCTGCAATAAAACCTTTCCATCTTACCAAGCACTCGGAGGCCACAAGGCAAGCCACCGCAAGTCCTCGCCCGAAGCCGACAACGTCCCCACCACCATCGGAATCGGAAGGATGCATCAGTGTTCCATATGTCACAAGGCCTTCCCCACGGGTCAGGCTCTGGGCGGCCATAAGCGATGCCACTATGACCGTGCTTTTGACTTGAATTTGCCGCCCATCACTCCTCCTCAGGACCAAACCCCTTAA 441 0.517 MALEALNLNSPMMSVEEEVKRKRSKRPRLDIPSNSNCTEEEYLALCLIMLAHNKTEPEPESHKCSICNKTFPSYQALGGHKASHRKSSPEADNVPTTIGIGRMHQCSICHKAFPTGQALGGHKRCHYDRAFDLNLPPITPPQDQTP. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00047 146 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Seca10g00047 146 MobiDBLite consensus disorder prediction 15 29 - -
Seca10g00047 146 Pfam C2H2-type zinc finger 104 128 - -
Seca10g00047 146 Pfam C2H2-type zinc finger 62 86 - -
Seca10g00047 146 MobiDBLite consensus disorder prediction 1 33 - -
Seca10g00047 146 SUPERFAMILY beta-beta-alpha zinc fingers 60 89 IPR036236 -
Seca10g00047 146 Gene3D Classic Zinc Finger 60 126 - -
Seca10g00047 146 SMART c2h2final6 62 84 IPR013087 -
Seca10g00047 146 SMART c2h2final6 104 126 IPR013087 -
Seca10g00047 146 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Seca10g00047 146 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 30 132 IPR044653 GO:0003700
Seca10g00047 146 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Seca10g00047 146 SUPERFAMILY beta-beta-alpha zinc fingers 102 129 IPR036236 -
Seca10g00047 146 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 126 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00047 Seca-Chr10 400913 401353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00047 1 145 C2H2 Transcription Factor Family AT5G43170 45.304 9.27e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g00047 zf-C2H2_6 2.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00047 - - aprc:113869798 159.844