Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00046 ATGAGCTGCAACGGTTGCCGTGTCCTCCGAAAAGGTTGCAGTGAGGAGTGTTTGCTGAGAGATGGGTTACAGTGGATAGAGAAGGCAGAAGAGCAGGGTCATGCCACCCTATTCGTCGCTAAGTTCTTCGGCCGTTCCACCCTCATGTCTTTCCTTTCCTCTGTACCTCCCAACCAAAGATCCGGTTTGTTTCGATCACTTGTGTATGAAGCAGTGGGACGTACAGTGAATCCAGTAAACGGAGCAGTGGGACTGTTGTGGACTGGGAACTGGCACCTCTGCCAATTGGGGGTAGACAAAGTTCTCAAAGGTAAAGGTGCCGCCTTGATTCATCATGATCACCGATCACAACACAGATCATTCAGAATGACAAGACGACACAACAACAAACACAAGAAGAAACCATCCGAATTATTGGAGTTGCCAACTGCCTCTGCCTCTAAAACCATCCTCCTTCCACTGTTCATCTGA 471 0.4883 MSCNGCRVLRKGCSEECLLRDGLQWIEKAEEQGHATLFVAKFFGRSTLMSFLSSVPPNQRSGLFRSLVYEAVGRTVNPVNGAVGLLWTGNWHLCQLGVDKVLKGKGAALIHHDHRSQHRSFRMTRRHNNKHKKKPSELLELPTASASKTILLPLFI. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00046 156 Pfam Lateral organ boundaries (LOB) domain 2 98 IPR004883 -
Seca10g00046 156 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 129 - -
Seca10g00046 156 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00046 Seca-Chr10 388795 389344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00046 1 104 AS2 family AT5G67420 72.115 2.96e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca10g00046 LOB 4.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00046 - - gmx:100803780 187.578