Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00025 ATGGGCACCACGTCCATGTGCGTGTTATTATTGTTATCTTGTAATTTCTTGCTTCTGTCGCATTCGGTTGTTGCCCAAGCTGAGCAAGCTGTGGCCCGATCCGAAAGAGAAGCATTGGAAATTATCATAGGAGGCGGCGGCGGCGGCTATGGCTATGGCTATGGCCCTGCTCCTTCCCCTTCCCCTTCTCCAGATGAATGTCCTCCTCCCCCTCCCCCTCCCGAACCTGAGTGTCCTCCTCCACCTAAACCACCTAAAATAACTAAGCCACCTCCACCTCCACCCCCACCCCGACCCCCCACCATGACCCGGTTGCAGAAAGCTCGCAAAGTGCTTCTAAATTTCAAATTGAATATCAATGACTCAACTGGATACACGAACAACTGGAGGAAAGGTACAGACACTTGTAGCTTTAACGGGATCCTATGTGCCACATTTCCAAATACAAAAAATGAGACAGCAGTTGCGGGATTGGACCTGAATCGAGCCGGGCTTTCTGGGAAGGGTAAATCATCACTGAGCCTCTCGGGTATCTTGGACAAGATACCAGAGCTTACATTCTTCCACGTAAACTCTAACAACTTCACCAGTGCCATCCCAAAGGAAATCATCAAGTACAAGTATTTCTTCGAGTTAGACCTCAGTAACAACAAAATTCCGGGCGAGTTTCCGAAGGAAGTGCTTCAGTCCAAGCAACTGGTGTTCCTGGACCTCAGGTTCAACTATCTCTATGGCCCAATCCCACCAGAACTGTTTGGGTTGGATTTGGATGTGATTTTCATCAACAACAATAAGTTCAGCGGTCCTCTCCCTGATAATTTTGGGTCCACACCGGCCAGGTACCTCACTTTTGCAAACAACCAACTCACGGGTTCAATCCCCAGAAGCATTGGGAAAGCTTCCAAAACCCTCACGGAAGTGCTCTTCTTGGGCAATTACTTTGAAGGGTGCTTGCCATTTGAAATTGGGTACCTAAAAAAGGCCACCGTCTTTGATGTCAGCAGAAACTGGCTAACTGGTCCCATCCCACACTCATTTGCCTGCTTGCAAAGCATTCAGTATCTCAATTTGGAGAAGAACCAGTTTTACGGAACTGTTCCGGAGATGGTTTGTCAACTACCAGGACTCCGCAATAATGGCAACCTCTCCCTAGCGGACAACTATTTCACGCAGGTGGGTCCTGCATGCAGAGACCTCATAAAGGCCAAGGTGCTCGACGTCACCAACAACTGCATCCTCGGCCTTCCAAATCAAAGATCATATGGAGAATGCGCTAAATTTTTCTCCAAGGCCAAGCAATGCCCAAATCCCAACTCATTCAATTACATCCCTTGTAAGCTCAAGGGACACAACTCCCAGGACCAGACACCCCCTCCTGCCCCGCTAACTTACAAGACTCTCAAACCTCATCGCCTCTGA 1419 0.4877 MGTTSMCVLLLLSCNFLLLSHSVVAQAEQAVARSEREALEIIIGGGGGGYGYGYGPAPSPSPSPDECPPPPPPPEPECPPPPKPPKITKPPPPPPPPRPPTMTRLQKARKVLLNFKLNINDSTGYTNNWRKGTDTCSFNGILCATFPNTKNETAVAGLDLNRAGLSGKGKSSLSLSGILDKIPELTFFHVNSNNFTSAIPKEIIKYKYFFELDLSNNKIPGEFPKEVLQSKQLVFLDLRFNYLYGPIPPELFGLDLDVIFINNNKFSGPLPDNFGSTPARYLTFANNQLTGSIPRSIGKASKTLTEVLFLGNYFEGCLPFEIGYLKKATVFDVSRNWLTGPIPHSFACLQSIQYLNLEKNQFYGTVPEMVCQLPGLRNNGNLSLADNYFTQVGPACRDLIKAKVLDVTNNCILGLPNQRSYGECAKFFSKAKQCPNPNSFNYIPCKLKGHNSQDQTPPPAPLTYKTLKPHRL. 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00025 472 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 103 457 - -
Seca10g00025 472 Gene3D Ribonuclease Inhibitor 105 279 IPR032675 -
Seca10g00025 472 Gene3D Ribonuclease Inhibitor 280 453 IPR032675 -
Seca10g00025 472 SUPERFAMILY L domain-like 108 415 - -
Seca10g00025 472 MobiDBLite consensus disorder prediction 57 102 - -
Seca10g00025 472 Pfam Leucine rich repeat N-terminal domain 108 143 IPR013210 -
Seca10g00025 472 MobiDBLite consensus disorder prediction 53 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00025 Seca-Chr10 265475 266893 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00025 104 441 Trihelix Transcription Factor Family AT1G12040 40.588 2.56e-75 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00025 - - gmx:100781083 557.37