Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00022 ATGCAAACTTATCGACTACCGGGTTCAATCCCCAGAAGCATTGGGAAAGCTTCCAAAACCCTCACGGAAGTGCTCTTCTTGGGCAATTACTTTGAAGGGTGCTTGCCATTTGAAATTGGGTACCTAAAAAAGGCCACCGTCTTTGATGTCAGCAGAAACTGGCTAACTGGTCCCATCCCACACTCATTTGCCTGCTTGCAAAGCATTCAGTATCTCAATTTGGAGAAGAACCAGTTTTACGGAACTGTTCCGGAGATGGTTTGTCAACTACCAGGACTCCGCAATAATGGCAACCTCTCCCTAGCGGACAACTATTTCACGCAGGTGGGTCCTGCATGCAGAGACCTCATAAAGGCCAAGGTGCTCGACGTCACCAACAACTGCATCCTCGGCCTTCCAAATCAAAGATCATATGGAGAATGCGCTAAATTTTTCTCCAAGGCCAAGCAATGCCCAAATCCCAACTCATTCAATTACATCCCTTGTAAGCTCAAGGGACACAACTCCCAGGACCAGACACCCCCTCCTGCCCCGCTAACTTACAAGACTCTCAAACCTCATCGCCTCTGA 570 0.4842 MQTYRLPGSIPRSIGKASKTLTEVLFLGNYFEGCLPFEIGYLKKATVFDVSRNWLTGPIPHSFACLQSIQYLNLEKNQFYGTVPEMVCQLPGLRNNGNLSLADNYFTQVGPACRDLIKAKVLDVTNNCILGLPNQRSYGECAKFFSKAKQCPNPNSFNYIPCKLKGHNSQDQTPPPAPLTYKTLKPHRL. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00022 189 Gene3D Ribonuclease Inhibitor 2 172 IPR032675 -
Seca10g00022 189 MobiDBLite consensus disorder prediction 167 189 - -
Seca10g00022 189 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 5 174 - -
Seca10g00022 189 SUPERFAMILY L domain-like 6 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00022 Seca-Chr10 250239 250808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00022 33 94 Leucine-rich Repeat extension Gene Families AT1G62440 33.871 7.21e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00022 - - gmx:100795489 286.189