Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00016 ATGAGAATGAGAATGGAGGAAGAGGAAGTGGTGTCATGCTCTTCTGATTCAGGTGATGATGATCTTCAAGTTGAACAACGAAAATCGCAGAATGTGGAAGCTCTCCTCGGGGGCAACCTCATCGTGAAGAGACAATCGTTGCTGCCGCGAGTTCTATCAGTAGTTTCGCAGGGAGCGGCTGTTTGCAGAAAACCCTTTAAACCTCCATCCTCTAAATCTGATGCTTACAACAATCAAGACCTTACTCGTAGGCTTTCTGCTCGCAAAAGGTTTGTCCCGTGGCGCTCTTCCTCTTCTCCTACTACTAGACCCCTGTTGGAGTTGAATTTGAATTTGAATGCTGATGTTGATGTTGATGTTGCTGAGGAGGTGAAACCATCCTTGCCCCCTGGGATTGATCCTCTAGTACTGTGGCACCCTCAACACTCTGAGGATGAGGCTTCTAATCTTAATCTGACAACAATAACTGTTGACCCATTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTTATGTTTGATTGTGTCGGTGGACTAAGTAGCACACCAAATGTACACGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACATTGCAGTCAATCACATTACTATATACTCTTATTTGTCAAGGGTTTGATGGGAAGCCAATGGTTAGAAAGTCCATCATTGTGACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAAATTAAGAAGTGGGTTGGAGAAAGAGTTCATCTTGTTGCTCTATGTGAAAGCACTAGAGAAGATGTTGTCTCTGGGATTGACAATTTTATAAGTTCCAAAAGCAATTTACAGGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTCGTCAAAATTTAGCTCTAGTGGTTCATGTGATCTTCTCATCTGTGATGAGGCTCATAGGCTGAAAAATGATCAGACAATAACCAACAGGGCATTGGCTGCTCTCCCATGCAAGCGTAGAATTTTGTTGTCAGGAACTCCCTTGCAAAATGACTTAGAAGAATTCTTTGCAATGGTCAACTTTACTAATCCTGGAATATTGGGTGATATTGCACATTTTCGACGTTACTATGAGGCACCAATTATTTGCGGAAGAGAACCTGCTGCCACTGCAGAAGAGAAGAAGCTAGGAGCTGAGCGCGCTGTGGAATTAAGTGTCAAAGTTAATGGGTTCATATTAAGAAGGACTAATGCACTATTGTCAAATCACTTACCACCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCAGACCTATACAAACATTTTATACAATCCAAAAATGTTAAACGGGCAATTACTGAAGAACGGAAGCAATCAAAGATTTTGGCCTATATAACAGCTCTCAAAAAGTTATGCAATCATCCAAAGCTCATCTATGATACCATACGAAGTGGGCGTCCAGGAACTTCAGGTTTTGAGGACTGTATTCGATTCTTCCCTCCGGAAATGTTATCTGGAAGGTCTGGGTCATGGACGGGAGGGCATGGAGCGTGGGTTGAGTTATCCGGGAAAATGCAAGTCTTAGCAAGATTACTCTCTCATTTACGTGAGAGAACAAATGATCGCATTGTCCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTCGCTCAATTGTGTCGGGAACAAAGGTACCCTTACTTGAGGCTTGACGGCGCTACATCAATCAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGACCCATCTAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGGCTCAATCTGATTGGTGGAAATCGACTTGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGGCAGAAGAAAAGAGTTTACATTTATAGATTTCTGAGTGCCGGAACGATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCGGGAGCAAACCGATAGCCTTGTGGAACAGGGTAACTTTCTATCGACAGAGGATCTTCGCGATTTGTTTACTTTTCGTGAGAACGTCAAGTCAGAGATTCATGAAAAAATGCGATGCAGTCGGTGCGGAGCTTATGATGAGCTCCGATCAACAATAGTTAATAGTGAATCTGATGAAGAAATCTCTGATATAGGTGGATTTGCAGAGATTGCAGGCTGCCTAGATAATTTAAAAAAATCAGAAAAGCAGGTAGGGACCCCATTGGAAGAAGATTTAAGTAGTTGGGGCCATCATTTTTCCCCAACTTCTGTGCCGGATGTTATCCTCCAGGCTTCAGCTGGTGATGAGGTGTGCCATACCCCATCCCCTTTATTTTCGTAG 2388 0.4309 MRMRMEEEEVVSCSSDSGDDDLQVEQRKSQNVEALLGGNLIVKRQSLLPRVLSVVSQGAAVCRKPFKPPSSKSDAYNNQDLTRRLSARKRFVPWRSSSSPTTRPLLELNLNLNADVDVDVAEEVKPSLPPGIDPLVLWHPQHSEDEASNLNLTTITVDPLLVRFLRPHQREGVQFMFDCVGGLSSTPNVHGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKSIIVTPTSLVSNWEAEIKKWVGERVHLVALCESTREDVVSGIDNFISSKSNLQVLIVSYETFRMHSSKFSSSGSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYYEAPIICGREPAATAEEKKLGAERAVELSVKVNGFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRAITEERKQSKILAYITALKKLCNHPKLIYDTIRSGRPGTSGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMQVLARLLSHLRERTNDRIVLVSNYTQTLDLFAQLCREQRYPYLRLDGATSISKRQKLVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQREQTDSLVEQGNFLSTEDLRDLFTFRENVKSEIHEKMRCSRCGAYDELRSTIVNSESDEEISDIGGFAEIAGCLDNLKKSEKQVGTPLEEDLSSWGHHFSPTSVPDVILQASAGDEVCHTPSPLFS. 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00016 795 FunFam DNA repair and recombination protein RAD54-like 511 680 - -
Seca10g00016 795 Gene3D - 428 697 - -
Seca10g00016 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 778 IPR027417 -
Seca10g00016 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 406 IPR027417 -
Seca10g00016 795 Gene3D - 136 405 IPR038718 -
Seca10g00016 795 SMART helicmild6 550 634 IPR001650 -
Seca10g00016 795 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 356 IPR014001 -
Seca10g00016 795 PANTHER SNF2/RAD54 FAMILY MEMBER 60 748 - -
Seca10g00016 795 MobiDBLite consensus disorder prediction 1 24 - -
Seca10g00016 795 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 523 684 IPR001650 -
Seca10g00016 795 FunFam DNA repair and recombination protein RAD54 134 405 - -
Seca10g00016 795 FunFam Predicted protein 428 502 - -
Seca10g00016 795 Pfam Helicase conserved C-terminal domain 524 633 IPR001650 -
Seca10g00016 795 CDD SF2_C_SNF 517 645 - -
Seca10g00016 795 CDD DEXHc_RAD54 165 406 - -
Seca10g00016 795 Gene3D - 406 716 IPR027417 -
Seca10g00016 795 SMART ultradead3 161 364 IPR014001 -
Seca10g00016 795 Pfam SNF2-related domain 168 474 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00016 Seca-Chr10 192438 201186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00016 189 693 RAD5 or RAD16-like Gene Family AT1G02670 23.689 9.71e-30 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca10g00016 SNF2_N 9.7e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00016 K10875 - gmx:100781631 1346.26