Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi9g00236 ATGGTTTTGATAAGTGGCAACAACAAAAGTGTTTTACAACAAACAAATGATGAAAGGGTCAAAGCACAAGGTGTTACAGTGCTTAACAATTCACATCAGCTAGGAAATAGGAGTGCTGAAAGTGGGCGTACACAGAATTTGCTCAACACAGGGGTGACCAAAGGAATGACAACAATGGATGAATTTAAGTATGGGTTTCCATTAGAAAGCTTATCAACTACTTCAAATAAATGGTGGGGAAGTAGTGAACATGATGACAGTGCAGGCACCAACCCAGACGGAGCCAAGAGTCAACCTGAAGAAAGAGGAGAGGAAGCAGAAAAGGAGGCATGTGAAACTGGAAAAGCTGAAAACAGTGAAATTCCTCAAGGTTCGTCTTTATTGACAGCTGTGAGGAAAAGAGCTGTAGAAGAAGGAAGAGAAACATTTAAATTAGTTCTGATTCTTTGTATGTTGTCGATATGGGTGATGTTTCGGAGAAAGTCTAGGAGATCTGTGGACAAGTACTCTTTATCCCAAATACCACATGTCTCAAAGGATATCAAAGTTGACAAGGTTGGGGTGCAGACTTCTCATGATCAAGTAGAAAGTGTATCTATTCCTGTTCATGACAAGGCAAGTGATAAGAATTCAGATAAGTTGTTAGTTCATTTGGGCATGAACAAATCCAGTGATCATGATAATATCAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGGGTTTAGTTCAATGTCAGGAGAAGAAGGAAGCTCTGGAACTGTTAGGAAGCAATCTACATTGTCATTTGGTGGGATGGTAACTGCATCTCCTCTAATTGGCTTGCCAGAAATTTCTCATCTTGGGTGGGGCCACTGGTTCACACTTAGAGATCTGGAACTCGCAACCAATCGTTTCTCTGCAGAGAATGTGATTGGTGAAGGTGGATATGGAGTTGTTTACAGGGGCAGATTGATCAATGGTTCTGAGGTGGCAGTGAAGAAACTTCTTAACAACTTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTGGAGGCTATAGGCCATGTTAGACATAAAAATCTTGTGCGCTTACTTGGATATTGCATAGAAGGAGTTCACAGGTTGCTGGTGTATGAATATGTGAATAATGGTAACTTAGAACAATGGTTACATGGGGCTATGAGCCAGCATGGGACACTTGCATGGGAAGCTCGCATGAAAGTTTTACTTGGCACAGCCAAAGCGCTTGCTTACTTACATGAAGCAATAGAACCAAAAGTTGTTCACCGAGATATAAAGTCTAGTAACATATTGATTGATAATGAGTTCAATGCAAAGGTTTCGGATTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATAACTACCAGAGTAATGGGAACATTTGGCTATGTGGCACCAGAATATGCTAATACTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCGGTTACTGGAAGGGACCCTGTAGACTATACGCGTCCTGCTAATGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGGGCTGAGGAAGTTGTGGACTCATGCCTTGAAGTGAAACCATCAACACGTGCTTTAAAGCGTGCCCTTCTTGTTGCACTTAGGTGTGTTGATCCTGATGCAGAAAAGAGACCCAAAATGAGTCAGGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTCCGAGAGGATCGAAGGAATAGAAAAAGCCGCACTGCGAGCATGGAAATTGAATCTCTGAAGGATATTTCTGGTCCATCTGATGCTGAAAAGGTGAAGGGTTCTGAAGGCCATGTACCTGATGATACAACTCAAGGGTCTTAA 1872 0.4204 MVLISGNNKSVLQQTNDERVKAQGVTVLNNSHQLGNRSAESGRTQNLLNTGVTKGMTTMDEFKYGFPLESLSTTSNKWWGSSEHDDSAGTNPDGAKSQPEERGEEAEKEACETGKAENSEIPQGSSLLTAVRKRAVEEGRETFKLVLILCMLSIWVMFRRKSRRSVDKYSLSQIPHVSKDIKVDKVGVQTSHDQVESVSIPVHDKASDKNSDKLLVHLGMNKSSDHDNISQCSSIYHHERGFSSMSGEEGSSGTVRKQSTLSFGGMVTASPLIGLPEISHLGWGHWFTLRDLELATNRFSAENVIGEGGYGVVYRGRLINGSEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRLLVYEYVNNGNLEQWLHGAMSQHGTLAWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDNEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAVTGRDPVDYTRPANEVNLVEWLKMMVGTRRAEEVVDSCLEVKPSTRALKRALLVALRCVDPDAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESLKDISGPSDAEKVKGSEGHVPDDTTQGS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi9g00236 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Sebi9g00236 623 MobiDBLite consensus disorder prediction 77 122 - -
Sebi9g00236 623 Gene3D Transferase(Phosphotransferase) domain 1 375 588 - -
Sebi9g00236 623 PANTHER OS01G0323000 PROTEIN 144 593 - -
Sebi9g00236 623 SUPERFAMILY Protein kinase-like (PK-like) 283 572 IPR011009 -
Sebi9g00236 623 ProSitePatterns Protein kinases ATP-binding region signature. 305 328 IPR017441 GO:0005524
Sebi9g00236 623 MobiDBLite consensus disorder prediction 577 592 - -
Sebi9g00236 623 CDD STKc_IRAK 305 571 - -
Sebi9g00236 623 Gene3D Phosphorylase Kinase; domain 1 281 374 - -
Sebi9g00236 623 MobiDBLite consensus disorder prediction 599 614 - -
Sebi9g00236 623 FunFam Putative receptor-like serine/threonine-protein kinase 375 585 - -
Sebi9g00236 623 MobiDBLite consensus disorder prediction 97 115 - -
Sebi9g00236 623 Coils Coil 319 339 - -
Sebi9g00236 623 FunFam Putative receptor-like protein kinase 281 374 - -
Sebi9g00236 623 Pfam Protein kinase domain 301 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi9g00236 623 ProSiteProfiles Protein kinase domain profile. 299 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi9g00236 623 MobiDBLite consensus disorder prediction 77 94 - -
Sebi9g00236 623 MobiDBLite consensus disorder prediction 577 623 - -
Sebi9g00236 623 SMART serkin_6 299 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi9g00236 Sebi-Chr9 3571607 3584127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi9g00236 148 573 Trihelix Transcription Factor Family AT1G70460 40.278 2.57e-94 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Sebi9g00236 Pkinase 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi9g00236 - - gmx:100813931 852.432