Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi9g00223 ATGGACAAACATTCTAAGGACTCTTTGCCAGCTCATGGTGTTGCAGGCCCAACTGAGATTCCGCCCCTTAATATTCCAAAAAGAGTGGGAAGCAGTGCATGGGGAATACCGCGGGCTGCTGATGTATTGCACGGTTCAAGTGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCTCATGAAAAGTTAAATTTGACTGATTCTGAACAATATGGTCAACCGGTTGATGATAACTTGCTATCATTAGATAAAGTTCACGGAGAGGATGAGGGACATGATCCTTTTGATGATTTTGAAACCAATGCAATTGGAAACATGCTTCCTGATGATGAAGAGGAGCTTTTAGCTGGGATAATGGATGATTTTGACCTAAGTAGGCTGCCCAGCCAAATTGAGGATTTGGATGAAAATGATCTGTTTGTCAATGGAGGGGGATTTGAAATGGATTTTGAACCCCAAGAGAGCCTTAGCATTGGTATGTCAAAGATGAGCATATCAGATGGAGTTGCTTCCAATGGCATTGGACATTATGCAATCCCGAATGGTGTGGGAACAGTGGCTGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAATATCAACAGCAATGTTGAGGACTCTGAATTACGAGCACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAACCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCGTCGGAAAAAGATATAAACCAAGGAACACTTGTAGTGTTCAATTTAGATCCCTCAGTATCAAATGATGATCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGAGAAACACCTCATAAGAGACACCACAAATTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCCCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCTAGCCGCCCTGGTGGGGCACGTAGAAACTTGATGCAACAATTGAGTCAAGAATTGGAACAAGATGAAGCTCGAACTTTTAGGCATCAAGTAGGTTCACCTTTGGCCAATTCTCCTCCAGGTAACTGGGCACAATTTGGTAGTCCAATTGAACACAGTCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGCCCTATTAATACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCTCCACATGCATCAACCTCTACCAAGATTGCACCAATTGGCAAGGACCCTGGAAGGGTTTCAAATCAGATGTTTGCCAACTCTGGATCAACACAAGGAGCAGCTTTTCAGCATTCTATGTCCTTTCCTGAACAAAAAGTAAATGCAAGTCCTAGGCCTATATCTACTTTTGGTGAATCAACTTCAAGTTCATCAAGTATTGGAACACTTTCTGGTCCTCAATTTCTTTGGGGAAGCCCAACTCCTTACTCAGAGCATTCAAACACATCTGCCTGGTCTTCATCTTCTGTGGGACATCCATTTACATCTAGTAGCCAAAGGCAGGGTTTCCCATATACTAGTCATCGCAGTCCTTTTCTTGGATCCCAACAACATCATCATCATGTTGGATCTGCTCCATCTGGCCTTCCTATTGATAGGCATTTTAGCTACTTCCCAGAGTCACCTGATGCTTCTCTCATGAGCCCAGTTGCATTTGGGAATTTAAATCACAATGATGGAAATTTTATGGTGAACATGGCTGCTCGTGCATCTGTAGGAGTTGGTGTTGGCCTTTCAGGAACTACCACTGAAATTAGTTCACCTAATTTCCGAATGATGTCACTGCCTAGGCATGGTTCATTGTTCCTTGGGAATGGTTCGTATTCTGGACTAGGAGCAACTAACATTGAGGCATTAGCTGAACGTGGACGAAGTAAGCGACCTGACAATAATGGGAACCAAATTGATAGTAAGAAGCTGTACCAGCTTGATCTAGACAAAATCATCAGCGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTGCTTGCTGCAATTGATGAAAATCACCGGGGGACTTATGACTTCCTCTATTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCTTCACACATCATACCCTTCTATAAGGCATTTAACGGGAAGAAATGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCACTAGCATATGCACGGATACAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCAAGCTTAATGAACGAGGACAAGCGGTGCCGGCCTATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGAACAGGTGAAAACCTACCTTAAATCTGTATGTACCTGGTCACTTGATCAGCAAACCTGA 2511 0.4209 MDKHSKDSLPAHGVAGPTEIPPLNIPKRVGSSAWGIPRAADVLHGSSDVSLFSSSLPVLPHEKLNLTDSEQYGQPVDDNLLSLDKVHGEDEGHDPFDDFETNAIGNMLPDDEEELLAGIMDDFDLSRLPSQIEDLDENDLFVNGGGFEMDFEPQESLSIGMSKMSISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPLANSPPGNWAQFGSPIEHSPLGSFSKSPGLGHASPINTNHLSGLAAILSPHASTSTKIAPIGKDPGRVSNQMFANSGSTQGAAFQHSMSFPEQKVNASPRPISTFGESTSSSSSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGHPFTSSSQRQGFPYTSHRSPFLGSQQHHHHVGSAPSGLPIDRHFSYFPESPDASLMSPVAFGNLNHNDGNFMVNMAARASVGVGVGLSGTTTEISSPNFRMMSLPRHGSLFLGNGSYSGLGATNIEALAERGRSKRPDNNGNQIDSKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGEQVKTYLKSVCTWSLDQQT 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi9g00223 836 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Sebi9g00223 836 CDD RRM1_MEI2_like 198 274 IPR034453 -
Sebi9g00223 836 Pfam RNA recognition motif 2 697 793 IPR007201 -
Sebi9g00223 836 PANTHER RNA RECOGNITION MOTIF-CONTAINING 49 815 - -
Sebi9g00223 836 FunFam Protein MEI2-like 1 283 378 - -
Sebi9g00223 836 Gene3D - 188 282 IPR012677 -
Sebi9g00223 836 SMART rrm1_1 285 353 IPR000504 GO:0003723
Sebi9g00223 836 SMART rrm1_1 200 268 IPR000504 GO:0003723
Sebi9g00223 836 SMART rrm1_1 699 775 IPR000504 GO:0003723
Sebi9g00223 836 MobiDBLite consensus disorder prediction 1 27 - -
Sebi9g00223 836 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Sebi9g00223 836 MobiDBLite consensus disorder prediction 522 555 - -
Sebi9g00223 836 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Sebi9g00223 836 SUPERFAMILY RNA-binding domain, RBD 699 784 IPR035979 GO:0003676
Sebi9g00223 836 MobiDBLite consensus disorder prediction 478 502 - -
Sebi9g00223 836 MobiDBLite consensus disorder prediction 522 568 - -
Sebi9g00223 836 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Sebi9g00223 836 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Sebi9g00223 836 CDD RRM3_MEI2_like 700 785 IPR034454 -
Sebi9g00223 836 CDD RRM2_MEI2_like 283 353 - -
Sebi9g00223 836 Gene3D - 283 381 IPR012677 -
Sebi9g00223 836 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi9g00223 Sebi-Chr9 3412689 3419813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi9g00223 194 370 Eukaryotic Initiation Factors Gene Family AT3G16380 25.253 1.38e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi9g00223 - - gmx:100812324 1467.6