Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi9g00165 ATGCCCTCAGCTCAGGATCCATTTTACGTTGTCAAGGTCGAGGTTCAAGAATCTATTGATAAGCTGCAATCTACTTTTCATCAATGGGAACGTACTCCTGATGCCGCAGAGCGAGTGAATCTTACAAAGGAGGTTCTTACTGGATGCGAAAGCATAGTGTGGCAGGTGGATGAATTGGACAAAGCAATTGCTGTAGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAAGATGAGCTTGAAAGCCGAAGGAGATGGACAAGTAGTGCTCGTACTCAGGTTGGCAAAGTGAAGAAAGCAGTTGAAGCTGGAAAGGGGACAAGTACAACAAGCCATTCTAGTGCAAATGGGATGCACCGAGAACTAATGAGGCTACCGGATTCTCATCAAATTGACACATCCAAACATTATGCTGCCCAAGATAATGATGATTTCATACAATCAGAATCAGATAGACAGATGCTTCTTATAAAGAAGCAGGATGAGGAGTTGGATGAGCTTAGTTTAAGTGTGCAAAGAATTGGAGGTGTTGGACTTACAATACATGAAGAACTCGTTGCACAGGAAAAGATTATAGATGAGCTGGGTAACGAGATGGACAGTACATCAAACCGTCTAGATTTTGTCCAAGTGAGTACTGCATCTAGTTTCCATTTTCTCATTCACATTGAAATGAAAAAAGTGGGAATGGTTATGAAGAAGGCTAGTGCGAAGGGCCAGATCATGATGATATTGGGTTTGTTGGCCCTGTTCATTTTCCTCTTTATCTTGGTCTTCCTCACCTAG 786 0.4237 MPSAQDPFYVVKVEVQESIDKLQSTFHQWERTPDAAERVNLTKEVLTGCESIVWQVDELDKAIAVASRDPSWYGIDEDELESRRRWTSSARTQVGKVKKAVEAGKGTSTTSHSSANGMHRELMRLPDSHQIDTSKHYAAQDNDDFIQSESDRQMLLIKKQDEELDELSLSVQRIGGVGLTIHEELVAQEKIIDELGNEMDSTSNRLDFVQVSTASSFHFLIHIEMKKVGMVMKKASAKGQIMMILGLLALFIFLFILVFLT 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi9g00165 261 SMART tSNARE_6 149 214 IPR000727 -
Sebi9g00165 261 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Sebi9g00165 261 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Sebi9g00165 261 Gene3D - 156 214 - -
Sebi9g00165 261 PANTHER SYNTAXIN 40 250 IPR045242 -
Sebi9g00165 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 207 IPR000727 -
Sebi9g00165 261 FunFam syntaxin-61 isoform X1 157 217 - -
Sebi9g00165 261 CDD SNARE_Qc 157 210 - -
Sebi9g00165 261 SUPERFAMILY SNARE fusion complex 152 209 - -
Sebi9g00165 261 FunFam Syntaxin 10 3 104 - -
Sebi9g00165 261 MobiDBLite consensus disorder prediction 99 118 - -
Sebi9g00165 261 Gene3D - 2 104 - -
Sebi9g00165 261 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi9g00165 Sebi-Chr9 2467534 2471250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi9g00165 55 261 SNARE and Associated Proteins AT1G28490 66.184 1.69e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi9g00165 K08500 - gmx:100787129 355.91