Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi9g00136 ATGGGGCAAGAAAACCAGGAAAAGGAGCCTGAGTGCTCTGAATTAAAAGTTGATTCTGATTTTATGGATCCCAAGGATCCTGTACCCCAAAAGGAAATACAGGAGGTCCATGAGACCATTCAAGAGGTTGGAGACAAGGGCAAGGATTTTAGTGCCAATAAGACGACACTAGGTGATGTAGAACTTCTGATGGGAATAGAGGAAACATCTACACAAGCAAATTGTTTTAATAAAGAACAGAAGCTAATGGATGAATTGCAGCTAGTTGTGAATGGGACTGAAGATCTTGTTTCTGATGATGGTTTAATCCCCTTGAACTCGGGATTAGGAGAGCATAATCAACTTGCCTCGGAAGGCTTTCATCCGTTTTTGATGTTTAACGTGTCCACAACAACAAAGGGACAAGCCTCTGCATCGGTAATTAGTACATCAAGTTTAAAGCATGAAAGTCAACAAAAGGAAATGACATTGATGGAACCAGTTTGTGGTGTAGTACGCACTCTTCCTGCTGCTGAGGAGGGTGAGTTTGAAAAGGAACAGCTATGTGGTCAAAAGGTTGACAAAGCAATGCATATTTCTATGAATAGCGAAGCATTGAATATGAGTGAAGATGGTGGATTGCTGCATTCTACTATTTTGAAAGATAAACATGAAACACAGAATGAAGGAGAGAAATTAGAAAAATCAAGTAGTGTGAACAATGCAACAAATCCTTCCAATAGTCTGATTGAAGAAGGGGATTTAGAAGAGGGAGAAATTTCTGGAGACTTTGGAATGGATGACAATTCATTTGACATGCCTTCTGAAGATGGTTCAATTTTGCAACAGATGAAAGCAGATGAGGTTCAGAAGCCCAAAAATATAATTGGAAACATGGTGTATGCTTGCAAGATAGGAAGTGGAGAAAAGGAAGAAGGTTATGAATCTACTTCCTTCATGGTAAATTCACTTCAAGATGCCAATAGCAGTGGACTAGTGGAACCCAGTACTAGTGATAAAACTGGGGTTGCATATGGAATTAAAGTAGCAATCTCTCGGGAAACTATTGAATATGATAAGGCAGGTGAAAATGGTTCTGCTCTGAAGCCCAGAAATAGCAAAGATAGACACGTAGGAAATAAAGGTGCCAATGACATGCCAACAAATTTAACTCAAAATCAAGCCTTGCACAGAGGTTCCTTGGAAGAAACCACTAACAATGATATTGGGAACCCATCTGCAGTGAAGATGGTCGATGCCAGTAGAAAGAGAAAACGTGGTCCTGGTTCTGAGGAGAAGAAAGATAAAGAGAAGCAGATGGTTGGTGGAAGTAGAAAAAAAAAACAGAGTCCTGGTTCTGAGGAGAAGGAAGATGATATAAAGAAGATAAATTATCGGAAGAAGCGAGCAGAAAAGAACAGAGAACTAGGTGTTAAAAGGTTGAAGTTGCCTCCAGTACAAAAACTGAAAACTATCCCACAATGTCGCCATTATCTCAAGGGAAGGTGCCATGAGGGTGACAAATGCCAGTTTTCACATGATGCAGTTCCTTTGACAAAATCCAAGCCATGTCTTCACTTTGCTCGTCACTCTTGCATGAAAGGGGATGATTGCCCATTTGATCATCAGCTCTCCAAGTATCCTTGTAACAATTTTGTGTCCAAAGGCTCTTGTAGCAGAGGTGATGCTTGCATGTTCTCACACCAGGTGCCAACCAACCAAGATATTCTTACACCTTCAAATGTTAGCAAACCAGAGTTGAAGTCTCCACTCTTTTCAGGAAATACAAATTTCAATATGCCACTTATCAATCATGCCTGTAGTCCTGTCCAGCAAAACCACGTCACCAATTCCACGGGAATTCATTCTCGCATTAATACAGAGCATAGGGTGACAAACACTTTACAGAAACAGCCTACACCAGTGCCCAAAGGAATTAGGTTCATCGATGTTGCAAAATTATCACCCAAACCCAGTACACCGAAACAAGGCATGGTAACTCCAAACAAGAAAAGTCTTGTCCAAAATGAAACCCATGCAGATCAAAATGCATCCGGCATAACACAAAACATGGGGGAAATTCCCAAGAAACTGCCAGCTGCAACACCTAAGGGAATTAACTTTCTTTCTTTTGGCAAAGGTCCTGTTTGCAGTTTTAGAAGTTCCATTAGCTCCCATGTAAATAGGGAAAATGGTATCAAGTTGCCTCAGTTAGTCAATTTTGGTTTTCGTGAGCAGGCTAATTCATCTTTAAATAAGGATGATTATGGCAAAGTTAGTGACAGAACAAAACAAAATGTACCGCAGACTGATCTATTCTCAAATCAGATTTTAGACCAACTTCAATCTGTGGCAGAAGGACTGGCGAAGTTTGCAGGGAAAGCTTCAATAGATGATTCTATGAGGGATGAAAGCCATAGTAATTCAGTTTTAGAGCGGAAAAAAAGCACTTGA 2433 0.4036 MGQENQEKEPECSELKVDSDFMDPKDPVPQKEIQEVHETIQEVGDKGKDFSANKTTLGDVELLMGIEETSTQANCFNKEQKLMDELQLVVNGTEDLVSDDGLIPLNSGLGEHNQLASEGFHPFLMFNVSTTTKGQASASVISTSSLKHESQQKEMTLMEPVCGVVRTLPAAEEGEFEKEQLCGQKVDKAMHISMNSEALNMSEDGGLLHSTILKDKHETQNEGEKLEKSSSVNNATNPSNSLIEEGDLEEGEISGDFGMDDNSFDMPSEDGSILQQMKADEVQKPKNIIGNMVYACKIGSGEKEEGYESTSFMVNSLQDANSSGLVEPSTSDKTGVAYGIKVAISRETIEYDKAGENGSALKPRNSKDRHVGNKGANDMPTNLTQNQALHRGSLEETTNNDIGNPSAVKMVDASRKRKRGPGSEEKKDKEKQMVGGSRKKKQSPGSEEKEDDIKKINYRKKRAEKNRELGVKRLKLPPVQKLKTIPQCRHYLKGRCHEGDKCQFSHDAVPLTKSKPCLHFARHSCMKGDDCPFDHQLSKYPCNNFVSKGSCSRGDACMFSHQVPTNQDILTPSNVSKPELKSPLFSGNTNFNMPLINHACSPVQQNHVTNSTGIHSRINTEHRVTNTLQKQPTPVPKGIRFIDVAKLSPKPSTPKQGMVTPNKKSLVQNETHADQNASGITQNMGEIPKKLPAATPKGINFLSFGKGPVCSFRSSISSHVNRENGIKLPQLVNFGFREQANSSLNKDDYGKVSDRTKQNVPQTDLFSNQILDQLQSVAEGLAKFAGKASIDDSMRDESHSNSVLERKKST 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi9g00136 810 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 215 765 IPR045124 GO:0003723|GO:0045892
Sebi9g00136 810 MobiDBLite consensus disorder prediction 789 810 - -
Sebi9g00136 810 Gene3D - 452 512 - -
Sebi9g00136 810 Coils Coil 446 466 - -
Sebi9g00136 810 SUPERFAMILY CCCH zinc finger 486 507 IPR036855 GO:0046872
Sebi9g00136 810 ProSiteProfiles Zinc finger C3H1-type profile. 511 535 IPR000571 GO:0046872
Sebi9g00136 810 MobiDBLite consensus disorder prediction 411 454 - -
Sebi9g00136 810 MobiDBLite consensus disorder prediction 226 243 - -
Sebi9g00136 810 MobiDBLite consensus disorder prediction 355 454 - -
Sebi9g00136 810 ProSiteProfiles Zinc finger C3H1-type profile. 536 564 IPR000571 GO:0046872
Sebi9g00136 810 MobiDBLite consensus disorder prediction 788 810 - -
Sebi9g00136 810 MobiDBLite consensus disorder prediction 377 405 - -
Sebi9g00136 810 Pfam CCCH-type zinc finger 488 507 IPR041367 -
Sebi9g00136 810 ProSiteProfiles Zinc finger C3H1-type profile. 482 509 IPR000571 GO:0046872
Sebi9g00136 810 MobiDBLite consensus disorder prediction 218 258 - -
Sebi9g00136 810 MobiDBLite consensus disorder prediction 1 28 - -
Sebi9g00136 810 Gene3D - 513 576 - -
Sebi9g00136 810 SMART c3hfinal6 511 537 IPR000571 GO:0046872
Sebi9g00136 810 SMART c3hfinal6 483 508 IPR000571 GO:0046872
Sebi9g00136 810 SMART c3hfinal6 539 563 IPR000571 GO:0046872
Sebi9g00136 810 SUPERFAMILY CCCH zinc finger 540 565 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi9g00136 zf-CCCH_4 4.5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi9g00136 - - aprc:113854397 934.095