Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi9g00115 ATGAATGATAAACAAGATGGAGAAAGAAATTTACCATTTATCATAATAACATATTACACGGCTAGGTCTGCCGCGGTAGGTTGCGGTAAGGTGTTAGTTGTTGATGATATTGAGGATCCTTCTGTAGAAAATCTAGTTTTGCGGCGTAAGCGTTGCTCTGAGAATTCTCCAAGTTCGATCATTGACCGTTTTGTTAGAAGTTGGGAAGCAGTTCCCCAGAGGAACTTGGAGGAATTAGGCACCCCTGAAGAGATTGGGGTCATTAAGAGAGCACTGTCCATTAGCCCAGGCCAAGAGGTGCCCGAAATAGAGGCTGCTAAATTTGTCGGGGTGGTTCATCTTTATTCTCATTTAGTGTTTTCGGAATCGGAGTCTGGTGTTGAGTTGTTAGGATTTGGAGAGAAAAGAAGGAACATGGCATCTTCAGATGATGAGGGCGATACTCAGCCACTATCTGTGTCAAATTACTATTTTGTTGATGACAAAGATGATATTGTATGTTTTTCTGTGTTGCCAATTCAATGGAGTGAGTCTGAGAGTTTGGATGGGAAGAAAGAGGTGTTCGTGAATGGTTCATCGGATAATGGGCTGCAGAAAATTTTCAAGCAAGTAACAGCGTGGAGGTTTGATCTTTCCAATGTGAAGCCTGAGATATCAGTGCTATCAAAGGATGTGGGATGGATCAAACTTCAGAAGCCAAGGAAGAGCTATGAAGATACCATAAGGACTATTTTAATCACCATTCATTTCCTGAATCATGTGAAGAAGAATCCTGACATTTCTGCCAAATCTATGTGGGATAACTTGAGTAAGAATAAGGAGTTTAGCTCTTATGAGGTTATCCCCTCGCAAAAGGACTTATTAAACCATATGGCTTTAATGGGGGAAGCTTCCAAAAGGGATGCTGCCTTAGCTAAGTCCAAGCTTTTGCTCATGGTTTTGGAAGATAAGGATAAGCTGAGGATTAAGAAGCTTTCTGATGAGGAAGCTAAAGATTTAGAACGACCTGGATTTATAATTGATGATATTGACAATGACAATGACATGATTGAGGAAACTGCAGAAGAGTCAGATGAAGAGGATGAGTTGTTTGATTCTGTTTGTGCAATTTGTGACAACGGTGGTGAACTTTTGTGTTGTGATGGAAAGTGTATGAGGTCCTTTCATGCTAATAAGGATGATGGTGAAGAATCTTGTGTCTCTCTCGGTTTTAGCAAGAAGAAAGTTGATGAGATCCAAAACTTCTACTGTAAGAATTGTGAATATAATCAGCACCAGTGCTTTGCATGCGGCAAGCTAGGCTGTTCTGATAAATTTTCGGGTGCTGAGGTCTTCAAATGCGCTTCTGCAACCTGTGGCTTCTTTTATCATCCACTTTGTGTTGCAAAGTTACTTCACCGGGTGATTGAGGATGCTCCAACAGAACTTGAGAAAAATATAGCTAAGGGGGAGCCTTTTACTTGCCCTACACATTATTGCTGTGTCTGCAAGGAAATGGAAGACAAGAATGAACATGAATTACAATTTGCTGTTTGTAGGCGTTGTCCCAAGTCATACCATCGTAAATGTCTGCCAAGAAAGATTGCTTTTAAAGACAAAGTGGATGAAGGTATTATAAAAAGGGCTTGGGAAGGACTTTTACCAAACAACCGCATTCTGATCTATTGCTTAAAGCATGAGATCGATGAAGAACTTGGGACTCCTATAAGAGATCATATAAAATTCTCCAATGGTAAAGCTACTGTTCGAGAAATTAAGACTGAAGAGAAGACAAAGCCTCCAACCAAAGAGAGAGTTATATTGAACAAGAACAATGTAGAATCAGATAATTTACTTACCAAAAAAACTAGTACTAAGGTATCTAAAATGTCTGAGAAAATGTCTTCTGGGAAAGTCATCAAGAAATCTGAAAAGATTTCTGGATCAAATGTATCAAGGAAGAAAGCTAATGAAGCATCAAGGTGTTTGAATGAAAATAAGAGATCGATCTCAAAGGAAACTGAAAGGTCTGACCATGAGGAAAACCAACCCTCCCTGGGTGAGCAACTATATGCTTTCTGGCAGAAGGGTTCTGAAAAAATTAGTTCTGGCAATCAGGTTGATAATGTAGCTAATAACACCCTGTCTGTTAAACCTACTAAAAAGCTGAGTAGTGCATTGCTCCCATTAGATGCAGATTCAGAAAGGAGATTGTTGGCTTTGTTTAAAGAATCTATGTCATCAATTACTTTGGAGGATGTGATAAAGGAACATAAATTTGCTTCTACCCACACTCATTCATTGAAAAATGTTGTGGAGAAGACCATTACAGTGGGGAAGTTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCTCTAAAGAAGCTGGAGGCTGGGCACAACATTCGGGATGCAGAAGCTGTTTGTGGCCCTGATGTTCTAAACCAGATATTTAAGTGGAAGGACAAGTTGAAAGTATATCTTGCACCTGTTCTAATTGGTAATCGCTACACATCATATGGTCGCCATTTCACACAAGTGGAAAAACTTGAAGGGATTGTTGATAAACTCCATTGGTATGTTCAGAATGGTGATACAATTGTGGACTTCTGTTGTGGTGCTAATGATTTTAGCATTCTTATGAAGAAAAAGCTTGATGAGACTGGGAAGAGATGCTCATACAAAAACTATGATTTACTTCCAACAAAGAATGATTTTAATTTTGAGATGAGAGATTGGATGACTGTCCAGAGAAAGGAGTTGCCTGCAGGGTCGCAATTGATTATGGGCCTTAATCCCCCCTTTGGGCTTAAAGCAGCTTTGGCCAACAAGTTTATAGACAAAGCTCTTGAGTTTGAACCGAAGCTCCTGATTCTTATAGTACCACCAGAGACAGAGAGGCTAGATAAAAAACGGTTGCCGTATGATCTTGTCTGGGAGGATGATAAGTTTCTAGCAGGCAAGTCATTTTATCTACCTGGATCAGTTGATACTTACGACAAGCAAATGGTACAATGGAATAAAAAGCCACCCCCAGTTTACCTTTGGAGCCGTCAGGACTGGACTGATAAACATATGGTCATAGCTCGGGAGCATGGTCACCTTATCAGCCAGCATACAGTATCAAAAATGGAAAGCTTTGATAATGAAAAAGCAACTGCCAGTCATACTATGGATGATAACTATGGTGATGATCTCGTGAAGTCAACTGATGATGAAGATCAAACATCTATGCATGAAGGACAGAAAGGAAGCTTGATTCATGAAAATGTTGATCGAGAGAGTCAAGAGAGAGAGGAATATTGGGTCAGCAAGGCTGAGAAGACCTCATGGAAGAGGAAACGAACTGAGGAAAATGATCGAAGAGGACCAGCTGTGACCTCACCAGCCAAAAGGCAAGCTATAAATCAAATGCCTGAGAGAGTACTGGGCCGTGGTATATCCAATCCAGTTGATGGGAGATCCTCAGTTGAAGGTTTTCAGCCCAAATCTGATATGATACCTCCATATTTTGAAGTTAGTGATAATGGTTGTAGGCAGCATCTGGAGCCCAGCTTGGAGTTAGGGGTAGCATATGATGGGACCCAAAAATGGCCAAGTGTTCCCAATCCCCTTTCTGACTATGGGGTTACAGATAAAGATGAACACCATAGCAGCCTTCTGGGAGACAGCTCCAATAGCATTGGACGTAGACCCTACATCAGGGAGGATGATATGTACCTGAGGGAACTAGAGACAAGGCAACAGGTTCCCCTTTATGGCCTTCAGAATCCTGATTATATGAGAAGTAATTATCTATCTGGTCATGATCCTGCTTATAGCCATATGGGATCTAGTTATTCAGTACTTGGTTCAGTATCTGAGCCGTCTTACATGATGAATTCACCGGCTATGCAACGATATGCACCTCGCCTTGATGAATTAAACCATGTCAGGATGGACTCTTTGGGGTCTGAACCTCCTATAATTGGTAGAAATGGCATTTCTGAACGTAATGTGCCCCAACCTGGATATAGAAATGGGCTTCTGGGGTTTGCAGCTGGTCCTCACCATTTGTATTCACGCCAGAATTCAGCAGGTCGGTTTCAATGA 4068 0.4108 MNDKQDGERNLPFIIITYYTARSAAVGCGKVLVVDDIEDPSVENLVLRRKRCSENSPSSIIDRFVRSWEAVPQRNLEELGTPEEIGVIKRALSISPGQEVPEIEAAKFVGVVHLYSHLVFSESESGVELLGFGEKRRNMASSDDEGDTQPLSVSNYYFVDDKDDIVCFSVLPIQWSESESLDGKKEVFVNGSSDNGLQKIFKQVTAWRFDLSNVKPEISVLSKDVGWIKLQKPRKSYEDTIRTILITIHFLNHVKKNPDISAKSMWDNLSKNKEFSSYEVIPSQKDLLNHMALMGEASKRDAALAKSKLLLMVLEDKDKLRIKKLSDEEAKDLERPGFIIDDIDNDNDMIEETAEESDEEDELFDSVCAICDNGGELLCCDGKCMRSFHANKDDGEESCVSLGFSKKKVDEIQNFYCKNCEYNQHQCFACGKLGCSDKFSGAEVFKCASATCGFFYHPLCVAKLLHRVIEDAPTELEKNIAKGEPFTCPTHYCCVCKEMEDKNEHELQFAVCRRCPKSYHRKCLPRKIAFKDKVDEGIIKRAWEGLLPNNRILIYCLKHEIDEELGTPIRDHIKFSNGKATVREIKTEEKTKPPTKERVILNKNNVESDNLLTKKTSTKVSKMSEKMSSGKVIKKSEKISGSNVSRKKANEASRCLNENKRSISKETERSDHEENQPSLGEQLYAFWQKGSEKISSGNQVDNVANNTLSVKPTKKLSSALLPLDADSERRLLALFKESMSSITLEDVIKEHKFASTHTHSLKNVVEKTITVGKLEGSVEAVRTALKKLEAGHNIRDAEAVCGPDVLNQIFKWKDKLKVYLAPVLIGNRYTSYGRHFTQVEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSILMKKKLDETGKRCSYKNYDLLPTKNDFNFEMRDWMTVQRKELPAGSQLIMGLNPPFGLKAALANKFIDKALEFEPKLLILIVPPETERLDKKRLPYDLVWEDDKFLAGKSFYLPGSVDTYDKQMVQWNKKPPPVYLWSRQDWTDKHMVIAREHGHLISQHTVSKMESFDNEKATASHTMDDNYGDDLVKSTDDEDQTSMHEGQKGSLIHENVDRESQEREEYWVSKAEKTSWKRKRTEENDRRGPAVTSPAKRQAINQMPERVLGRGISNPVDGRSSVEGFQPKSDMIPPYFEVSDNGCRQHLEPSLELGVAYDGTQKWPSVPNPLSDYGVTDKDEHHSSLLGDSSNSIGRRPYIREDDMYLRELETRQQVPLYGLQNPDYMRSNYLSGHDPAYSHMGSSYSVLGSVSEPSYMMNSPAMQRYAPRLDELNHVRMDSLGSEPPIIGRNGISERNVPQPGYRNGLLGFAAGPHHLYSRQNSAGRFQ 1355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi9g00115 1355 Pfam Cytosine specific DNA methyltransferase replication foci domain 152 271 IPR022702 -
Sebi9g00115 1355 SMART PHD_3 367 421 IPR001965 -
Sebi9g00115 1355 SMART PHD_3 426 492 IPR001965 -
Sebi9g00115 1355 SMART PHD_3 493 560 IPR001965 -
Sebi9g00115 1355 CDD PHD3_NSD 492 559 - -
Sebi9g00115 1355 MobiDBLite consensus disorder prediction 1136 1155 - -
Sebi9g00115 1355 CDD PHD2_NSD 426 491 - -
Sebi9g00115 1355 MobiDBLite consensus disorder prediction 616 678 - -
Sebi9g00115 1355 MobiDBLite consensus disorder prediction 1040 1117 - -
Sebi9g00115 1355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 514 IPR013083 -
Sebi9g00115 1355 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 143 1045 - -
Sebi9g00115 1355 MobiDBLite consensus disorder prediction 635 650 - -
Sebi9g00115 1355 MobiDBLite consensus disorder prediction 1040 1124 - -
Sebi9g00115 1355 Coils Coil 340 360 - -
Sebi9g00115 1355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 423 IPR013083 -
Sebi9g00115 1355 MobiDBLite consensus disorder prediction 651 676 - -
Sebi9g00115 1355 SUPERFAMILY FYVE/PHD zinc finger 352 423 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi9g00115 Sebi-Chr9 1744756 1766302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi9g00115 356 467 PHD Transcription Factor Family AT3G14980 30.357 6.47e-07 52.4