Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi9g00098 ATGGTCATCAAGACCGTTAAGACTTCGAAATGGGGCACTGTAGGCCAAGAACGGGTTGCATATCCGAATGTTGATTACGTCATCACAGAACAGATGGAATCGGATCTTGGCAAGCTCTTCATTGGAGGAATATCTTGGGACACTGATGAGGAACGTCTCAAAGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGAGATCGCGCAACAGGCCGTGCTCGTGGTTTTGGTTTTGTTGTCTTTGCTGATCCTGCTGTTGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAACACAATATAAATAGACAATCTGGTAGTGTACATGCATCTCCTGGTCCTGGACGTACAAAAAAGATTTTTGTTGGAGGTTTACCGTCAACTGTCACGGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTTATGTATGATCACAATACCCAGAGGCCAAGAGGTTTTGGTTTCATTACATATGATTCAGAAGAAGCTGTGGATAGAGTTCTTTTTAAAACTTTTCATGAACTCAATGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTGGTCCCAGCCGAAGCCCGTTGATAGGATATAACTATAGTTTGAATAGGGCCAGTAGCTACCTAAATAGTTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTCAGGATGGATGGTAGGTTTAGTCCACTTGCTAGTGGTAGAACTGGATTCTCTCCTTTTGGCAACACTGGTTATGGAATGGGGATGAATTTGGATTCAGGATTGAGCCCAAGCTTTGGAGGAAATTCTAATTATGGGAACAATTTAGGATATGGTCGAATATTTAGTCCTTTCTATGGTGGCAACTCAAACAGATATACCACTCCTATAGGCTATAATGGGGGTAATGGGAGAAACGATTCTCTTATGAACTCAACTTCTAGGAATGTCTGGGGAAATGGGGGCCTGAATAATGCCAATAACCCAGTCAGCCCTGCCCAGGGTGGAGGTGCTGCTTCTGGCTATGCTACTGGGAGTAATGTTTATGAAGGTGGAGATAGCAGCTTTGGATTAGGTGGGGGAGGGTATGGAAGAAACAGCAGTACAGGTGTGACTCCATCCTCTACATTTAATGCATCATCTGGTGGTTATGATGGTTCCTATGGAGACTTGTACCGCAGTGGCAGTGGTTCAGTTTACAATGACTCTACTTGGCGGTCTGCTGCTTCTGAGATAGATGGTTCTGGCTCTTTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGACCCAGTAAAGAGTTCTGAGGGTTATATTGGAAACTACAATGTTACAAGTAGGCAATCTAATAGAGGTAAGATCTTTTGGCTACATTCGTGTTTATAA 1470 0.4286 MVIKTVKTSKWGTVGQERVAYPNVDYVITEQMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQHNINRQSGSVHASPGPGRTKKIFVGGLPSTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYSLNRASSYLNSYAQGYSMSPIGGYGVRMDGRFSPLASGRTGFSPFGNTGYGMGMNLDSGLSPSFGGNSNYGNNLGYGRIFSPFYGGNSNRYTTPIGYNGGNGRNDSLMNSTSRNVWGNGGLNNANNPVSPAQGGGAASGYATGSNVYEGGDSSFGLGGGGYGRNSSTGVTPSSTFNASSGGYDGSYGDLYRSGSGSVYNDSTWRSAASEIDGSGSFGYGLGGIASDDPVKSSEGYIGNYNVTSRQSNRGKIFWLHSCL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi9g00098 489 SMART rrm1_1 138 210 IPR000504 GO:0003723
Sebi9g00098 489 SMART rrm1_1 38 109 IPR000504 GO:0003723
Sebi9g00098 489 FunFam Heterogeneous nuclear ribonucleoprotein 1 134 221 - -
Sebi9g00098 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 214 IPR000504 GO:0003723
Sebi9g00098 489 MobiDBLite consensus disorder prediction 111 133 - -
Sebi9g00098 489 SUPERFAMILY RNA-binding domain, RBD 136 224 IPR035979 GO:0003676
Sebi9g00098 489 Gene3D - 37 119 IPR012677 -
Sebi9g00098 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 195 IPR000504 GO:0003723
Sebi9g00098 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 106 IPR000504 GO:0003723
Sebi9g00098 489 SUPERFAMILY RNA-binding domain, RBD 19 134 IPR035979 GO:0003676
Sebi9g00098 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 113 IPR000504 GO:0003723
Sebi9g00098 489 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 32 479 - -
Sebi9g00098 489 CDD RRM1_hnRNPA_hnRNPD_like 39 109 - -
Sebi9g00098 489 FunFam Heterogeneous nuclear ribonucleoprotein 1 36 118 - -
Sebi9g00098 489 CDD RRM2_Hrp1p 138 215 - -
Sebi9g00098 489 Gene3D - 134 220 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi9g00098 Sebi-Chr9 1532575 1537401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi9g00098 36 211 Eukaryotic Initiation Factors Gene Family AT2G23350 24.719 2.38e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi9g00098 K14411 - gmx:100805131 787.334