Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi9g00087 ATGCTGTTACTCTTCTCGCACTACTCCACTATGATCCACCATGGAACTGATTTTCTCCTCCAACCCATTTTCACACGTGGGATATCTGCTTCACTGCATCTAGTCTTCCTTGTTATAGACTTTGTAATCTATGGAAAGCATGTTTCCTTGCCAATCACATATCTCGTTTCTGATATAGGTTCCTCTATTACGGGTTTGTTTCTTTGCTATGTTGCATGTTCTGTAAACAATATGGCTAAACTTGCCCCTCTTGAAGAGGCCCTTTTGAACGGAAATAAGAAGACTTTAGACCATGAGGACCTCCCACTGCTTGCTATCAATGACAGTGCTTATGGGGCTTTTCCAACTTTTAGAAACAAGCTTGAGTCAGAGTGTGGTAGTGTTGAGAGAGTGACCACTCTTAAGCTGGTCAAGGTGTTATTCCTCTCAACATGGCAAGGGATCCTTTTATCAGGCTTATTTGCATTCTTGTACACATGTGCTTCGTATGTTGGACCCTACCTTATTGACAACCTTGTTCAATACCTCAATGGGGAAAACAAGTTTAAGAATGAAGGCTTTATTTTGGCTATGGGATTTGTTGCTGCAAAGCTTGTGGAGTGCCTTTCACGGAGGCACTGGATGTTTAGGTTCCAGCAGGTTGGGGTTAGGATGCAATCAATGTTGGTGGCAATGATCTATGCTAAAGGTTTGACCCTTTCATGTCAATCAAAGGAGGGTCAGAGTAGTGGGGAGATCATCAATTTAATGACTGTTGATGCTGCGAGGATTGGTGAATTTTGTTGGTACATGCATGATCCATGGATGGCTGTTCTGCAAGTTGCTTTGGCCTTGTTAATTCTTTATAGAAGTGTAGGGGTTGCTTCAACAGCTGCTTTTGCTGCCACTGTAATTGTGATGTTGCTAAACCTTCCTGTGGCATCATTGCAAGAAAAATTCCAAGGTAAGGTAATGGAGTTCAAAGATAAAAGAATGAAGGCCACGTCTGAGACTCTAATGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAACTTAGGAAGACAGAAGAGATATGGCTAAAGAAGTTTCTTGTTGGTACAGCAATTATTAGATTTCTCTTCTTTAACGCCCCAACTTTTATTGCTGTGGTTACTTTTGGTGCTTGTGTTCTTATAGGCATCCCACTTGAATCAGGGAAGATCTTATCTGCACTTGCAACATTCCGAATTCTTCAAATGCCCATCTACTCTCTTCCTGACACAATTTCAATGATTGCACAAACTAAGGTTTCACTTGATAGGATTACATCATTTCTTTGTCTGGATGACTTGCAGACTGAAATAGTGGAGAAGCTTCCACGGGGTAGTTCTGATATAGCAATTGAATTAGTGGATGGAAATTTCTCTTGGGATTTATCTTCTGTTAATACAACATTGAAAAACATAAATCTCAGAGTTTTTCATGGCATGAAGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCTACTTTACTTTCATCTTTATTGGGTGAAGTACCAAAGCTAACTGGGACCCTGAAGGTATGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATACAGAGTGGCAAGATAGAAGAGAACATATTATTTGGTAAAGAGATGGACAGGGAAAAATATGAGAAGGTGCTAGAGGCATGTTCGTTGACAAAAGACCTAGAGGTTCTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCCCGTGCTCTTTACCAAGATGCTGATATATATCTGCTTGATGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCCCATATCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACTGTTATATACATAACTCATCAAGTGGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAGAGAAGGAATGATTACTCAATCTGGAAAATACAATGACATTCTCAGGTCAGGCACTGATTTTATGGAACTTGTAGATGCACATAGAGCAGCCCTGTCTTCAGTGAAGTCCTTAGAGAGAAGGCCCACATTTAGAACATTGAGTATGACCAAGGAGGACACAGATTCATTTAGTTGTTTTGAACTTGAGGAACAAGTGGAAAACATAGATGATCAAAATGGCAAGTCAGATGACACAGTTGAGCCAAAAGGCCAACTTGTTCAAGAAGAAGAAAGGGAAAAGGGTAGAGTTGGGTTTAAAGTCTACTGGAAATACATCACAACAGCCTATGGAGGAGCTCTTGTACCCTTCATATTACTCTCACAGACACTCACTGTGACTTTCCAGATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAAGCACAGAACCTGATATTGGAAGCTTTACACTTATGGTTGTCTATGTTGCTTTGGCGATTGGAAGTTCCTTTTTCACCCTTGCCAGGGCAATTCTTGCTGTGATATCTGGATACAAGACAGCCACTATGCTCTTTGATAAAATGCATTTGTGCATTTTTCGAGCACCAATGTCATTTTTTGATGCCACCCCAAGTGGACGAATCCTTAATAGAGCTTCAACAGACCAAAGTGCACTAGATATGAGCATTCCAAATCTAGTATGGGGAATTACCTTCAATCTGATTCAGCTCTTGGGAAATATTGCTGTGATGTCTCAAGCTGCATGGCAGGTGTTTATAATCTTGATTCCTGTCATGGCAGCTTGCATATGGTACCAGCGATACTACTCACCATCAGCACGGGAATTGGCACGATTAGTTGGTATATGCCAAGCTCCAGTTATACAACATTTTTCTGAAACCATATCTGGATCAACAACCATAAGAGGTTTTGAGCAAGAAACAAGATTTAATGACATAAATATGAAATTGATAGATAAATATTCCCAACCCAAATTATACAGTGCTAGTGCAATGGAATGGCTGAGTTTCAGATTGGATATTTTATCCTCTACCATATTTGCCTTCTGTTTGGTTTTCTTGATAAGTTTTCCAAGTTCAATTACTGATCCAAGCATTGCGGGATTGGCTGTGACATATGGACTTAATCTAAATTCTCTACAATTCAATTTAATCTGGTATCTTTGCAATTTAGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCCATCCCAAGTGAAGCTCCTCTTGTAATAAAAGACAACCAACCAGATCATTATTGGCCATCATTTGGAGAGGTTCATATCCAGGATTTACAGGTTCGGTATGCTCCTCACTTGCCTCTTGTTTTACGTGGTCTTACTTGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTAGTGCAAACACTTTTCCGAATTGTTGAACCTGTTGCTGGACAAATATTGGTAGATAACATTAACACCTCTCTGATTGGAATTCATGATTTACGGTCCAGATTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAGCAACCTGGATCCACTGGAAGAGTACACTGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTACGGAAAAAAGAAGGGAAGCTTGACTCCATAGTTACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGACAGTTGGTCTGCCTTGGCCGTGTTCTACTAAAGAAAAGTAAGATCTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCCACAGATAATGTTATTCAGAAAACAGTCAAGCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGAATTACTTCAATCCTTGATAGTGACATGGTTCTGTTTCTAAACGAAGGGCTTATTGAGGAATATGACTCACCAAAGAAGCTGCTTAAGAACAAATCTTCATCTCTTGCTCAGCTAGTAGCAGAATACACAAGGAGGTCAGACTCTGGTTTTGGAAGTTGA 4020 0.4012 MLLLFSHYSTMIHHGTDFLLQPIFTRGISASLHLVFLVIDFVIYGKHVSLPITYLVSDIGSSITGLFLCYVACSVNNMAKLAPLEEALLNGNKKTLDHEDLPLLAINDSAYGAFPTFRNKLESECGSVERVTTLKLVKVLFLSTWQGILLSGLFAFLYTCASYVGPYLIDNLVQYLNGENKFKNEGFILAMGFVAAKLVECLSRRHWMFRFQQVGVRMQSMLVAMIYAKGLTLSCQSKEGQSSGEIINLMTVDAARIGEFCWYMHDPWMAVLQVALALLILYRSVGVASTAAFAATVIVMLLNLPVASLQEKFQGKVMEFKDKRMKATSETLMNMRILKLQAWEMKFLSKIIQLRKTEEIWLKKFLVGTAIIRFLFFNAPTFIAVVTFGACVLIGIPLESGKILSALATFRILQMPIYSLPDTISMIAQTKVSLDRITSFLCLDDLQTEIVEKLPRGSSDIAIELVDGNFSWDLSSVNTTLKNINLRVFHGMKVAVCGTVGSGKSTLLSSLLGEVPKLTGTLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDREKYEKVLEACSLTKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHIFKECLLGLLKTKTVIYITHQVEFLPDADLILVMREGMITQSGKYNDILRSGTDFMELVDAHRAALSSVKSLERRPTFRTLSMTKEDTDSFSCFELEEQVENIDDQNGKSDDTVEPKGQLVQEEEREKGRVGFKVYWKYITTAYGGALVPFILLSQTLTVTFQIASNYWMALATPVSASTEPDIGSFTLMVVYVALAIGSSFFTLARAILAVISGYKTATMLFDKMHLCIFRAPMSFFDATPSGRILNRASTDQSALDMSIPNLVWGITFNLIQLLGNIAVMSQAAWQVFIILIPVMAACIWYQRYYSPSARELARLVGICQAPVIQHFSETISGSTTIRGFEQETRFNDINMKLIDKYSQPKLYSASAMEWLSFRLDILSSTIFAFCLVFLISFPSSITDPSIAGLAVTYGLNLNSLQFNLIWYLCNLENKIISVERILQYTSIPSEAPLVIKDNQPDHYWPSFGEVHIQDLQVRYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKSTLVQTLFRIVEPVAGQILVDNINTSLIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKEGKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNVIQKTVKQHFSECTVITIAHRITSILDSDMVLFLNEGLIEEYDSPKKLLKNKSSSLAQLVAEYTRRSDSGFGS 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi9g00087 1339 SUPERFAMILY ABC transporter transmembrane region 774 1075 IPR036640 GO:0005524|GO:0016020
Sebi9g00087 1339 Gene3D - 445 704 IPR027417 -
Sebi9g00087 1339 FunFam ABC transporter C family member 5 448 695 - -
Sebi9g00087 1339 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 463 686 IPR003439 GO:0005524
Sebi9g00087 1339 CDD ABC_6TM_ABCC_D1 150 437 IPR044746 GO:0140359
Sebi9g00087 1339 SMART AAA_5 490 668 IPR003593 GO:0016887
Sebi9g00087 1339 SMART AAA_5 1119 1304 IPR003593 GO:0016887
Sebi9g00087 1339 Pfam ABC transporter 481 615 IPR003439 GO:0005524
Sebi9g00087 1339 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 87 1327 - -
Sebi9g00087 1339 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 149 429 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi9g00087 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 685 IPR027417 -
Sebi9g00087 1339 SUPERFAMILY ABC transporter transmembrane region 145 441 IPR036640 GO:0005524|GO:0016020
Sebi9g00087 1339 CDD ABCC_MRP_domain1 463 662 - -
Sebi9g00087 1339 FunFam ABC transporter C family member 5 737 1074 - -
Sebi9g00087 1339 Pfam ABC transporter 1111 1258 IPR003439 GO:0005524
Sebi9g00087 1339 Pfam ABC transporter transmembrane region 149 416 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi9g00087 1339 Pfam ABC transporter transmembrane region 776 1019 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi9g00087 1339 ProSitePatterns ABC transporters family signature. 588 602 IPR017871 GO:0005524|GO:0016887
Sebi9g00087 1339 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1093 1327 IPR003439 GO:0005524
Sebi9g00087 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1082 1319 IPR027417 -
Sebi9g00087 1339 CDD ABCC_MRP_domain2 1091 1311 - -
Sebi9g00087 1339 FunFam ABC transporter C family member 10 132 445 - -
Sebi9g00087 1339 CDD ABC_6TM_ABCC_D2 774 1068 IPR044726 GO:0140359
Sebi9g00087 1339 Gene3D - 1076 1329 IPR027417 -
Sebi9g00087 1339 FunFam ABC transporter C family member 3 1076 1328 - -
Sebi9g00087 1339 Gene3D ABC transporter type 1, transmembrane domain 738 1074 IPR036640 GO:0005524|GO:0016020
Sebi9g00087 1339 Gene3D ABC transporter type 1, transmembrane domain 121 444 IPR036640 GO:0005524|GO:0016020
Sebi9g00087 1339 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 776 1056 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi9g00087 Sebi-Chr9 1330645 1336698 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi9g00087 463 702 Calmodulin-binding Proteins AT2G36910 29.231 2.99e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi9g00087 - K05666 gmx:106794105 2145.55